Browse Element(s) Details


OsAffx.16314.1.S1_at

Description tigr:9635.m01795
TID=OsAffx.16314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1784011/11hypothetical protein
LOC_Os12g238691/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17790NANA7+10520240..10523853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17800NANA7+10526982..10533652retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17810Os.51869.1.S1_at2/117+10535832..10538453retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17820OsAffx.5355.1.S1_at11/117+10540233..10540544hypothetical protein
LOC_Os07g17830OsAffx.5356.1.S1_at11/117+10543677..10544222hypothetical protein
LOC_Os07g17840OsAffx.16314.1.S1_at11/117+10545832..10552192hypothetical protein
LOC_Os07g17840OsAffx.10439.1.S1_at3/117+10545832..10552192hypothetical protein
LOC_Os07g17850OsAffx.24046.2.S1_x_at11/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.7.S1_x_at4/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.3.S1_x_at1/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.5.S1_x_at1/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17860OsAffx.28496.2.S1_at11/117+10568443..10571852hypothetical protein
LOC_Os07g17860OsAffx.14745.1.S1_at1/117+10568443..10571852hypothetical protein
LOC_Os07g17870NANA7+10574929..10575522hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16314.1.S1_at--285--8291Chr07:10547785..10547809 (25 bp)
GGCTTATGACCCTAATAATCCTTGC
LOC_Os07g17840
OsAffx.16314.1.S1_at--684--5311Chr07:10547758..10547782 (25 bp)
GAAGGTTGGCACTATGTATCCTAAC
LOC_Os07g17840
OsAffx.16314.1.S1_at--519--5311Chr07:10547731..10547755 (25 bp)
GAAGGAGTTTAGTCTAGCCATGAGA
LOC_Os07g17840
OsAffx.16314.1.S1_at--460--6131Chr07:10547238..10547262 (25 bp)
GAGGGCTTAGGTACCGAGAACTTCA
LOC_Os07g17840
OsAffx.16314.1.S1_at--269--71Chr07:10546578..10546602 (25 bp)
ATTGCTAATTTGTGACCATGCGGAA
LOC_Os07g17840
OsAffx.16314.1.S1_at--616--611Chr07:10546561..10546585 (25 bp)
ATGCGGAAATTTACAGAGCGTTGGT
LOC_Os07g17840
OsAffx.16314.1.S1_at--457--5871Chr07:10546546..10546570 (25 bp)
GAGCGTTGGTTATGGTTCTATGGAA
LOC_Os07g17840
OsAffx.16314.1.S1_at--275--10671Chr07:10546186..10546210 (25 bp)
TTGCCAAGGGTGTTAGGTGCACCTT
LOC_Os07g17840
OsAffx.16314.1.S1_at--515--7773Chr05:18893102..18893125 (24 bp)
GGTGCACCTTTACCTAAGAAGACAA
NONE
OsAffx.16314.1.S1_at--1083--10071Chr07:10546127..10546151 (25 bp)
TAGGACCAAAACTTGCCTTGAAGGT
LOC_Os07g17840
OsAffx.16314.1.S1_at--597--931Chr07:10546099..10546123 (25 bp)
AGGAAGTCCAAATCCAAAACTGCTT
LOC_Os07g17840
Target Sequence 
GGCTTATGACCCTAATAATCCTTGCATGAAGGTTGGCACTATGTATCCTAACATGAAGGAGTTTAGTCTAGCCATGAGAC
AATGTGCTATAATCAAGGAGTTTGAGTTGAAGTTGGTGAAAACTGACCCTGAAAATATAGGTGGTTGTAAATTTGATGGT
TACCCTTGGCATATGGTGGAGGGCTTAGGTACCGAGAACTTCACCAGGGAGTGTGATAGAGATAGATACCGTGGAGAGAG
TTTTAACAACTGGATTAAGGATTACAAGGCATTGCTAATTTGTGACCATGCGGAAATTTACAGAGCGTTGGTTATGGTTC
TATGGAATAAGAGGAGAAGAATTGTAGAGAAGGTTGAATTGCCAAGGGTGTTAGGTGCACCTTTACCTAAGAAGACAAAT
GGAAGATACGGAAAGCTTAGGACCAAAACTTGCCTTGAAGGTGGTAGGAAGTCCAAATCCAAAACTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis