Browse Element(s) Details


OsAffx.14745.1.S1_at

Description tigr:9633.m01613
TID=OsAffx.14745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1798011/11hypothetical protein
LOC_Os07g145702/11hypothetical protein
LOC_Os07g178601/11hypothetical protein
LOC_Os12g226901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g17930NANA5+10287996..10289563retrotransposon protein, putative, unclassified
LOC_Os05g17940OsAffx.20689.1.A1_x_at1/115+10292643..10294661retrotransposon protein, putative, unclassified
LOC_Os05g17950Os.23638.1.A1_x_at1/115+10295223..10296791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17960NANA5+10300454..10306550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g17970OsAffx.20354.1.S1_at2/115+10306913..10309844retrotransposon protein, putative, unclassified
LOC_Os05g17980OsAffx.14745.1.S1_at11/115+10311351..10314818hypothetical protein
LOC_Os05g17980OsAffx.8916.1.S1_x_at1/115+10311351..10314818hypothetical protein
LOC_Os05g17990Os.27532.1.S1_a_at4/115+10316534..10326394hypothetical protein
LOC_Os05g18000NANA5+10328317..10334828retrotransposon protein, putative, LINE subclass
LOC_Os05g18010NANA5+10338971..10345249retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14745.1.S1_at--989--671Chr05:10312440..10312464 (25 bp)
ATGACGGGAGTCTACAAGGAGCTTC
LOC_Os05g17980
OsAffx.14745.1.S1_at--400--7651Chr05:10312435..10312459 (25 bp)
GGGAGTCTACAAGGAGCTTCGAGTT
LOC_Os05g17980
OsAffx.14745.1.S1_at--406--5493Chr12:12810895..12810914 (20 bp)
GAACAGTTCTCGCATTCTCGGAGGA
LOC_Os12g22690
OsAffx.14745.1.S1_at--487--5751Chr05:10312173..10312197 (25 bp)
GACGGTCTCGCGCAATCGATGGCAC
LOC_Os05g17980
OsAffx.14745.1.S1_at--807--3191Chr05:10312161..10312185 (25 bp)
CAATCGATGGCACCGCTTGCAGAGA
LOC_Os05g17980
OsAffx.14745.1.S1_at--829--8211Chr05:10311450..10311474 (25 bp)
GGAATTTGCTAACTCGCATCCATCA
LOC_Os05g17980
OsAffx.14745.1.S1_at--481--3192Chr04:1472999..1473023 (25 bp)
CAATCTTGAATGCACTTGGCCGCAA
NONE
OsAffx.14745.1.S1_at--773--51161Chr12:22117769..22117788 (20 bp)
GCACTTGGCCGCAAGACTTGTGTGA
NONE
OsAffx.14745.1.S1_at--1038--45170Chr12:22117771..22117795 (25 bp)
GCCGCAAGACTTGTGTGATCGTGTA
NONE
OsAffx.14745.1.S1_at--766--74718Chr12:5720141..5720162 (22 bp)
GTGTGATCGTGTATGGTCCTTCCCA
NONE
OsAffx.14745.1.S1_at--1036--39913Chr12:18135531..18135551 (21 bp)
CGTGTATGGTCCTTCCCATTTGGGT
NONE
Target Sequence 
ATGACGGGAGTCTACAAGGAGCTTCGAGTTCCCCGTGGAGATCCCGAGGAGTCGGCGGCCGGATATATCTCGTGGCTGAA
TGGGGCTTGTGCACAGCTCGAAGGGATCGGCAAACGTCTCGACGAGGCCCTGAAGCAGGAGTGTCGTCGATCAAGCCGGT
ACGCCGGAGGACATGTGCTGGCCTGCATCCGAGATCACCACCCGCAGCTACACCTCGAGTTCCTCCACGAACAGTTCTCG
CATTCTCGGAGGACTCCCGCGGAGATCGACGGTCTCGCGCAATCGATGGCACCGCTTGCAGAGAAGGAATTTGCTAACTC
GCATCCATCACCATCTGCAATCTTGAATGCACTTGGCCGCAAGACTTGTGTGATCGTGTATGGTCCTTCCCATTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis