Browse Element(s) Details


OsAffx.20689.1.A1_x_at

Description gb:NM_195124.1
DB_XREF= gi:37531607
TID=OsAffx.20689.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0011A24.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g246802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g033702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g524201/11hypothetical protein
LOC_Os06g331101/11hypothetical protein
LOC_Os05g179401/11retrotransposon protein, putative, unclassified
LOC_Os05g155801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g195941/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24660OsAffx.14808.1.S1_at11/115+14183400..14184425IPP transferase family protein, expressed
LOC_Os05g24670NANA5+14195613..14197765retrotransposon protein, putative, unclassified
LOC_Os05g24680OsAffx.14809.1.S1_at11/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680OsAffx.20689.1.A1_x_at2/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680Os.23638.1.A1_x_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680OsAffx.20673.1.A1_x_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680Os.8606.1.S1_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24690OsAffx.14810.1.S1_at11/115+14216765..14227924expressed protein
LOC_Os05g24700NANA5+14229844..14230611hypothetical protein
LOC_Os05g24710OsAffx.19542.3.S1_x_at2/115+14239028..14244421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24710OsAffx.11259.1.S1_at1/115+14239028..14244421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24710OsAffx.18086.1.S1_x_at1/115+14239028..14244421retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20689.1.A1_x_at--630--4515Chr06:18060189..18060213 (25 bp)
GCCGCCGCGTGCACGAAGTCCGCCG
NONE
OsAffx.20689.1.A1_x_at--622--4412Chr10:4953733..4953757 (25 bp)
GCCACCGCCATTAGGTGCGCCGTGG
NONE
OsAffx.20689.1.A1_x_at--489--1795Chr04:1735575..1735594 (20 bp)
ACCGCCATTAGGTGCGCCGTGGTGT
NONE
OsAffx.20689.1.A1_x_at--867--44910Chr06:18060292..18060316 (25 bp)
GCCGTGGTGTGGAGAAGCTCGGCCG
NONE
OsAffx.20689.1.A1_x_at--384--67943Chr12:13918680..13918701 (22 bp)
GTTTTCGCCGCCGACCACCGGAGCA
NONE
OsAffx.20689.1.A1_x_at--806--4152Chr10:4953607..4953631 (25 bp)
CGCCGTCGTGCATCTTTCGGTGTAG
NONE
OsAffx.20689.1.A1_x_at--1012--4012Chr10:4953604..4953628 (25 bp)
CGTCGTGCATCTTTCGGTGTAGTGG
NONE
OsAffx.20689.1.A1_x_at--1154--432Chr10:4953596..4953620 (25 bp)
ATCTTTCGGTGTAGTGGTGAGTACC
NONE
OsAffx.20689.1.A1_x_at--17--74915Chr07:9951309..9951333 (25 bp)
GTGGTGAGTACCAACGGGTTCGCCT
NONE
OsAffx.20689.1.A1_x_at--1002--60515Chr07:9951314..9951338 (25 bp)
GAGTACCAACGGGTTCGCCTCGTTG
NONE
OsAffx.20689.1.A1_x_at--686--9392Chr10:4953559..4953583 (25 bp)
TCGTTGCCCTCTACGCGTTGATGCC
NONE
Target Sequence 
GCCGCCGCGTGCACGAAGTCCGCCGCCGCCGCCGGCCATCTTCGGTCGCGTCNCGCCGCCGTCTCCGCCGTCGCCTTTGG
TCGCCGCCACCGCCATTAGGTGCGCCGTGGTGTGGAGAAGCTCGGCCGCCCCTTCGTTTTCGCCGCCGACCACCGGAGCA
CCCTCGACGTCGTCGACCCGAGCCGCCGCCGCCTTCTTCTTCGTCGCCGGCCGCCGTCGTGCATCTTTCGGTGTAGTGGT
GAGTACCAACGGGTTCGCCTCGTTGCCCTCTACGCGTTGATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20689.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis