Browse Element(s) Details


OsAffx.14809.1.S1_at

Description tigr:9633.m02206
TID=OsAffx.14809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2468011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24660OsAffx.14808.1.S1_at11/115+14183400..14184425IPP transferase family protein, expressed
LOC_Os05g24670NANA5+14195613..14197765retrotransposon protein, putative, unclassified
LOC_Os05g24680OsAffx.14809.1.S1_at11/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680OsAffx.20689.1.A1_x_at2/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680Os.23638.1.A1_x_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680OsAffx.20673.1.A1_x_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680Os.8606.1.S1_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24690OsAffx.14810.1.S1_at11/115+14216765..14227924expressed protein
LOC_Os05g24700NANA5+14229844..14230611hypothetical protein
LOC_Os05g24710OsAffx.19542.3.S1_x_at2/115+14239028..14244421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24710OsAffx.11259.1.S1_at1/115+14239028..14244421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24710OsAffx.18086.1.S1_x_at1/115+14239028..14244421retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14809.1.S1_at--649--6331Chr05:14202377..14202401 (25 bp)
GATGCTTTAACTCAAACTAGAACTG
LOC_Os05g24680
OsAffx.14809.1.S1_at--760--6551Chr05:14202329..14202353 (25 bp)
GATTCACTGGTTTATCGGATTAGAG
LOC_Os05g24680
OsAffx.14809.1.S1_at--92--3491Chr05:14202292..14202316 (25 bp)
CAGGCATGATGTTGGTGACTCGCTT
LOC_Os05g24680
OsAffx.14809.1.S1_at--883--8931Chr05:14202277..14202301 (25 bp)
TGACTCGCTTTCTTGGTGGTTTGAA
LOC_Os05g24680
OsAffx.14809.1.S1_at--816--1251Chr05:14202247..14202271 (25 bp)
AGATTCGTTTTGCAGTAGTGGTTCA
LOC_Os05g24680
OsAffx.14809.1.S1_at--784--7871Chr05:14202228..14202252 (25 bp)
GGTTCAACTTGATACACTTCAGCAG
LOC_Os05g24680
OsAffx.14809.1.S1_at--358--10791Chr05:14202220..14202244 (25 bp)
TTGATACACTTCAGCAGGCAGTTGC
LOC_Os05g24680
OsAffx.14809.1.S1_at--583--5011Chr05:14202207..14202231 (25 bp)
GCAGGCAGTTGCTATTGCACTTAAG
LOC_Os05g24680
OsAffx.14809.1.S1_at--616--5291Chr05:14202162..14202186 (25 bp)
GAAGGCTACTAAAACTAAGGGCAAG
LOC_Os05g24680
OsAffx.14809.1.S1_at--765--311Chr05:14202127..14202151 (25 bp)
ATACTTGTCCTAAACCTGATTTTGG
LOC_Os05g24680
OsAffx.14809.1.S1_at--423--10411Chr05:14202108..14202132 (25 bp)
TTTTGGTGCTGAGACAACCCCTGCT
LOC_Os05g24680
Target Sequence 
GATGCTTTAACTCAAACTAGAACTGTGGCTAAGTATAAACATCAATTTGATTCACTGGTTTATCGGATTAGAGTATTTGA
TCCATCAGGCATGATGTTGGTGACTCGCTTTCTTGGTGGTTTGAAGGATGAGATTCGTTTTGCAGTAGTGGTTCAACTTG
ATACACTTCAGCAGGCAGTTGCTATTGCACTTAAGCAAGAAACTGTGTTGGCAGAGAAGGCTACTAAAACTAAGGGCAAG
TTTGTTAAGTATACTTGTCCTAAACCTGATTTTGGTGCTGAGACAACCCCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis