Browse Element(s) Details


OsAffx.18086.1.S1_x_at

Description tigr:9638.m00123
TID=OsAffx.18086.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0220011/11hypothetical protein
LOC_Os08g222841/11retrotransposon protein, putative, unclassified
LOC_Os04g136501/11hypothetical protein
LOC_Os02g257201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g247101/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02150OsAffx.31069.1.S1_x_at1/1110+717096..720063retrotransposon protein, putative, unclassified
LOC_Os10g02160NANA10+720799..723377retrotransposon protein, putative, unclassified
LOC_Os10g02170NANA10+723804..726822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g02180NANA10+733549..735851retrotransposon protein, putative, unclassified
LOC_Os10g02190NANA10+736200..736730retrotransposon protein, putative, unclassified
LOC_Os10g02200OsAffx.18086.1.S1_x_at11/1110+738439..738985hypothetical protein
LOC_Os10g02210OsAffx.20798.1.S1_x_at9/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.20798.1.S1_at5/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.30217.1.S1_x_at2/1110+745328..749864POT family protein
LOC_Os10g02210Os.46546.2.S1_x_at1/1110+745328..749864POT family protein
LOC_Os10g02220Os.4008.1.S1_a_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02220Os.4008.2.S1_x_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18086.1.S1_x_at--721--1491Chr10:738924..738948 (25 bp)
AGCAAATGAACAAGGCGGTTGCCGG
LOC_Os10g02200
OsAffx.18086.1.S1_x_at--262--1511Chr10:738820..738844 (25 bp)
AGCAGCGGGCGGGTGTTAACAACCA
LOC_Os10g02200
OsAffx.18086.1.S1_x_at--229--5071Chr10:738819..738843 (25 bp)
GCAGCGGGCGGGTGTTAACAACCAA
LOC_Os10g02200
OsAffx.18086.1.S1_x_at--1017--9431Chr10:738777..738801 (25 bp)
TCGGAGATGAGGATAAGAACAAAGC
LOC_Os10g02200
OsAffx.18086.1.S1_x_at--221--5512Chr10:738761..738785 (25 bp)
GAACAAAGCAGAATCAAAGGTGGAG
LOC_Os10g02200
OsAffx.18086.1.S1_x_at--894--2311Chr10:738746..738770 (25 bp)
AAAGGTGGAGATTGATTTGAGAACA
LOC_Os10g02200
OsAffx.18086.1.S1_x_at--1010--8032Chr10:738740..738764 (25 bp)
GGAGATTGATTTGAGAACAGAGCAA
LOC_Os10g02200
OsAffx.18086.1.S1_x_at--1065--30738Chr12:17232392..17232411 (20 bp)
AATCAGCTGGAGTCCGGATCGGCTA
NONE
OsAffx.18086.1.S1_x_at--608--7198Chr08:14123814..14123838 (25 bp)
GTCCGGATCGGCTACGATCAGGATC
NONE
OsAffx.18086.1.S1_x_at--44--395Chr02:15057668..15057692 (25 bp)
ATCAGGATCGGCTGGGTCCGAGTCA
LOC_Os02g25720
OsAffx.18086.1.S1_x_at--846--92725Chr12:7973581..7973753 (25 bp)
TCCGAGTCAGACTGGAGATATGTTT
NONE
Target Sequence 
AGCAAATGAACAAGGCGGTTGCCGGGACTTCTAGAAAGAGAAGCAGCGGGCGGGTGTTAACAACCAAATTTGGTTATATC
AGTATCGGAGATGAGGATAAGAACAAAGCAGAATCAAAGGTGGAGATTGATTTGAGAACAGAGCAAGAATCAGCTGGAGT
CCGGATCGGCTACGATCAGGATCGGCTGGGTCCGAGTCAGACTGGAGATATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18086.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis