Browse Element(s) Details


Os.4008.2.S1_x_at

Description gb:NM_194569.1
DB_XREF= gi:37530497
TID=Os.4008.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4008 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative LeOPT1 - oligopeptide transporter (OSJNBb0012A20.6), mRNA.
PROD=putative LeOPT1 - oligopeptide transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0222011/11Major Facilitator Superfamily protein, expressed
LOC_Os10g023401/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02180NANA10+733549..735851retrotransposon protein, putative, unclassified
LOC_Os10g02190NANA10+736200..736730retrotransposon protein, putative, unclassified
LOC_Os10g02200OsAffx.18086.1.S1_x_at11/1110+738439..738985hypothetical protein
LOC_Os10g02210OsAffx.20798.1.S1_x_at9/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.20798.1.S1_at5/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.30217.1.S1_x_at2/1110+745328..749864POT family protein
LOC_Os10g02210Os.46546.2.S1_x_at1/1110+745328..749864POT family protein
LOC_Os10g02220Os.4008.1.S1_a_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02220Os.4008.2.S1_x_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02230Os.4009.1.S1_at11/1110+766451..767947hypothetical protein
LOC_Os10g02240Os.46739.1.A1_x_at8/1110+772270..775156POT family protein, expressed
LOC_Os10g02240OsAffx.20798.1.S1_x_at1/1110+772270..775156POT family protein, expressed
LOC_Os10g02250OsAffx.30239.1.S1_at11/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250OsAffx.30223.1.S1_s_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250Os.22461.1.S1_at1/1110+776906..783515Calcium binding EGF domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4008.2.S1_x_at--786--1891Chr10:756564..756588 (25 bp)
ACGTCATCAGCGTCCTCGTCTGGGT
LOC_Os10g02220
Os.4008.2.S1_x_at--33--9951Chr10:756532..756556 (25 bp)
TACGACACCGTGCTGGTGCCACTGG
LOC_Os10g02220
Os.4008.2.S1_x_at--373--2171Chr10:756528..756552 (25 bp)
ACACCGTGCTGGTGCCACTGGCACG
LOC_Os10g02220
Os.4008.2.S1_x_at--172--4651Chr10:756501..756525 (25 bp)
GCGTCACCGGCAAGGACCGTGGCAT
LOC_Os10g02220
Os.4008.2.S1_x_at--830--9671Chr10:756498..756522 (25 bp)
TCACCGGCAAGGACCGTGGCATCTC
LOC_Os10g02220
Os.4008.2.S1_x_at--830--1651Chr10:756465..756489 (25 bp)
AGCGCATTGGCGTCGGCCTCGCGCT
LOC_Os10g02220
Os.4008.2.S1_x_at--321--3391Chr10:756381..756405 (25 bp)
CAGCGCCGGTGAGCATCATGTGGCA
LOC_Os10g02220
Os.4008.2.S1_x_at--233--4972Chr10:822301..822816 (25 bp)
GCATCATGTGGCAGGCGCCGTCGTA
LOC_Os10g02340
Os.4008.2.S1_x_at--275--911Chr10:756324..756348 (25 bp)
AGGCGTTCAGCGTGATCGGCATGAT
LOC_Os10g02220
Os.4008.2.S1_x_at--569--8851Chr10:756312..756336 (25 bp)
TGATCGGCATGATGGAGTTCTTCTA
LOC_Os10g02220
Os.4008.2.S1_x_at--909--8991Chr10:756267..756291 (25 bp)
TGAAGAGCCTGTGCACGGCGCTCGG
LOC_Os10g02220
Target Sequence 
ACGTCATCAGCGTCCTCGTCTGGGTCCCCGTCTACGACACCGTGCTGGTGCCACTGGCACGGCGCGTCACCGGCAAGGAC
CGTGGCATCTCCCACCTGCAGCGCATTGGCGTCGGCCTCGCGCTCGCCGCGGTGGCCATGGCGTACTCGGCGGTGGTCGA
GGCACGGCGGCTGGGGACGGCGCCAGCGCCGGTGAGCATCATGTGGCAGGCGCCGTCGTACCTGGTGCTGGGCGTGGCGG
AGGCGTTCAGCGTGATCGGCATGATGGAGTTCTTCTACGAGCAGTCGCCGGAGTCGATGAAGAGCCTGTGCACGGCGCTC
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4008.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis