Browse Element(s) Details


OsAffx.30239.1.S1_at

Description tigr:9638.m00128
TID=OsAffx.30239.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0225011/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02220Os.4008.1.S1_a_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02220Os.4008.2.S1_x_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02230Os.4009.1.S1_at11/1110+766451..767947hypothetical protein
LOC_Os10g02240Os.46739.1.A1_x_at8/1110+772270..775156POT family protein, expressed
LOC_Os10g02240OsAffx.20798.1.S1_x_at1/1110+772270..775156POT family protein, expressed
LOC_Os10g02250OsAffx.30239.1.S1_at11/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250OsAffx.30223.1.S1_s_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250Os.22461.1.S1_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02260Os.21957.2.S1_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.2.S1_x_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_x_at10/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_at7/1110+789816..793898POT family protein, expressed
LOC_Os10g02270NANA10+797132..797852expressed protein
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30239.1.S1_at--1135--1231Chr10:778903..778927 (25 bp)
AGTTGTGTTGTTGGAGCTCATTAGC
LOC_Os10g02250
OsAffx.30239.1.S1_at--1097--6611Chr10:778894..778918 (25 bp)
GTTGGAGCTCATTAGCAGAAAGCCA
LOC_Os10g02250
OsAffx.30239.1.S1_at--986--2031Chr10:778853..778877 (25 bp)
ACTATAGCCTTGTCATTGAGTTCCA
LOC_Os10g02250
OsAffx.30239.1.S1_at--327--8891Chr10:778837..778861 (25 bp)
TGAGTTCCAAAAGGCGTATGATCGA
LOC_Os10g02250
OsAffx.30239.1.S1_at--912--10111Chr10:778690..778714 (25 bp)
TATGAAGGAGGTAGCTGCACGGCTT
LOC_Os10g02250
OsAffx.30239.1.S1_at--359--1611Chr10:778678..778702 (25 bp)
AGCTGCACGGCTTATGATGCTGCGA
LOC_Os10g02250
OsAffx.30239.1.S1_at--490--3731Chr10:777153..777177 (25 bp)
CTAAATCGAGATTGTTGGAGGTATA
LOC_Os10g02250
OsAffx.30239.1.S1_at--104--8132Chr10:777109..777133 (25 bp)
GGACTTGCCGAAACCAAGAACTTGG
LOC_Os10g02250
OsAffx.30239.1.S1_at--467--4591Chr10:777030..777054 (25 bp)
GCGAAAGCCACAGGGTGAAAGCCGT
LOC_Os10g02250
OsAffx.30239.1.S1_at--223--7531Chr10:777007..777031 (25 bp)
GTGGCAAGGCATTACACGGGCCTCA
LOC_Os10g02250
OsAffx.30239.1.S1_at--3--7571Chr10:776990..777014 (25 bp)
GGGCCTCACCAGTCAAGGACCTCAT
LOC_Os10g02250
Target Sequence 
AGTTGTGTTGTTGGAGCTCATTAGCAGAAAGCCAACAATATATGACAAGAACTATAGCCTTGTCATTGAGTTCCAAAAGG
CGTATGATCGAGAAAATAGTGGGAGAGCATTGTTTGATAAGGAGATTGCAATTGAAGAAGATGTCTTGATCTTAGAAGAA
ATTGGTAGGTTGGCAATGGATTGTTTAAAAGAAAAGATTGAGGAACGACCTGATATGAAGGAGGTAGCTGCACGGCTTAT
GATGCTGCGAAGATCTAGAAACCTTGGACAAGAAAACTACAATAGATTTTCTAAATCGAGATTGTTGGAGGTATACCACG
AAGGGCCTTCGGCCGGACTTGCCGAAACCAAGAACTTGGGCAACAGGCTCAGACCGGAGGCAAGCGGTGAAGGTCGAGAA
GAAAACCATATGGGCGAAAGCCACAGGGTGAAAGCCGTGGCAAGGCATTACACGGGCCTCACCAGTCAAGGACCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis