Browse Element(s) Details


Os.21957.2.S1_at

Description gb:AK069771.1
DB_XREF= gi:32979795
TID=Os.21957.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative LeOPT1 - oligopeptide transporter (OSJNBb0012A20.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028O11, full insert sequence.
FL= gb:AK069771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0226011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02230Os.4009.1.S1_at11/1110+766451..767947hypothetical protein
LOC_Os10g02240Os.46739.1.A1_x_at8/1110+772270..775156POT family protein, expressed
LOC_Os10g02240OsAffx.20798.1.S1_x_at1/1110+772270..775156POT family protein, expressed
LOC_Os10g02250OsAffx.30239.1.S1_at11/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250OsAffx.30223.1.S1_s_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250Os.22461.1.S1_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02260Os.21957.2.S1_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.2.S1_x_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_x_at10/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_at7/1110+789816..793898POT family protein, expressed
LOC_Os10g02270NANA10+797132..797852expressed protein
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21957.2.S1_at--1118--9051Chr10:790574..790598 (25 bp)
TGCATCGGTATGTCACAGTTCTTCT
LOC_Os10g02260
Os.21957.2.S1_at--222--3551Chr10:790572..790596 (25 bp)
CATCGGTATGTCACAGTTCTTCTAT
LOC_Os10g02260
Os.21957.2.S1_at--902--9431Chr10:790570..790594 (25 bp)
TCGGTATGTCACAGTTCTTCTATGA
LOC_Os10g02260
Os.21957.2.S1_at--1062--6911Chr10:790567..790591 (25 bp)
GTATGTCACAGTTCTTCTATGACCA
LOC_Os10g02260
Os.21957.2.S1_at--665--7091Chr10:790563..790587 (25 bp)
GTCACAGTTCTTCTATGACCAGGCG
LOC_Os10g02260
Os.21957.2.S1_at--552--691Chr10:790549..790573 (25 bp)
ATGACCAGGCGCCAGACAGCATGAA
LOC_Os10g02260
Os.21957.2.S1_at--208--8931Chr10:790548..790572 (25 bp)
TGACCAGGCGCCAGACAGCATGAAG
LOC_Os10g02260
Os.21957.2.S1_at--972--4551Chr10:790541..790565 (25 bp)
GCGCCAGACAGCATGAAGAGCGTTT
LOC_Os10g02260
Os.21957.2.S1_at--652--4351Chr10:790538..790562 (25 bp)
CCAGACAGCATGAAGAGCGTTTGCG
LOC_Os10g02260
Os.21957.2.S1_at--1047--10271Chr10:790519..790543 (25 bp)
TTTGCGCAGCGCTTGGGCAGCTCGC
LOC_Os10g02260
Os.21957.2.S1_at--757--9151Chr10:790517..790541 (25 bp)
TGCGCAGCGCTTGGGCAGCTCGCAA
LOC_Os10g02260
Target Sequence 
TGCATCGGTATGTCACAGTTCTTCTATGACCAGGCGCCAGACAGCATGAAGAGCGTTTGCGCAGCGCTTGGGCAGCTCGC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21957.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis