Browse Element(s) Details


OsAffx.30241.1.S1_at

Description tigr:9638.m00137
TID=OsAffx.30241.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0233011/11hypothetical protein
LOC_Os05g301801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02260Os.21957.2.S1_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.2.S1_x_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_x_at10/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_at7/1110+789816..793898POT family protein, expressed
LOC_Os10g02270NANA10+797132..797852expressed protein
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein
LOC_Os10g02340OsAffx.20797.1.S1_at11/1110+820900..823141POT family protein, expressed
LOC_Os10g02340Os.4008.2.S1_x_at1/1110+820900..823141POT family protein, expressed
LOC_Os10g02350Os.46462.1.S1_at11/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02350Os.46462.2.S1_x_at9/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02360Os.21379.1.S1_at11/1110+832317..834357Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30241.1.S1_at--400--7671Chr10:818064..818088 (25 bp)
GGGTTCCCAAGAGGTAAGTGTCATG
LOC_Os10g02330
OsAffx.30241.1.S1_at--278--2811Chr10:818079..818186 (25 bp)
AAGTGTCATGGTTACGGGAAATCGA
LOC_Os10g02330
OsAffx.30241.1.S1_at--376--3031Chr10:818204..818228 (25 bp)
AATCCTCATAGGCAAGTGTATAACA
LOC_Os10g02330
OsAffx.30241.1.S1_at--726--7431Chr10:818219..818243 (25 bp)
GTGTATAACATAGTCCTACTCGGAA
LOC_Os10g02330
OsAffx.30241.1.S1_at--790--2911Chr10:818244..818268 (25 bp)
AAGGATCGGGATTCAGGATTGTACT
LOC_Os10g02330
OsAffx.30241.1.S1_at--218--6591Chr10:818260..818284 (25 bp)
GATTGTACTGTATCGTGGTGAGTTC
LOC_Os10g02330
OsAffx.30241.1.S1_at--715--7193Chr10:818277..818301 (25 bp)
GTGAGTTCGGTATCTCCGAGTTCTA
LOC_Os10g02330
OsAffx.30241.1.S1_at--942--6455Chr10:818308..818623 (25 bp)
GATCAAGATCATCGTACCAACGTAC
LOC_Os10g02330
OsAffx.30241.1.S1_at--195--9831Chr10:818626..818650 (25 bp)
TAAAACCCTATTCATCCTGTCTTGG
LOC_Os10g02330
OsAffx.30241.1.S1_at--523--6191Chr10:819560..819584 (25 bp)
GAGGAATGACTAGTCTGCCCAGTAT
LOC_Os10g02330
OsAffx.30241.1.S1_at--336--1191Chr10:819580..819604 (25 bp)
AGTATAACCGCTGGCACTGTGAGTG
LOC_Os10g02330
Target Sequence 
GGGTTCCCAAGAGGTAAGTGTCATGGTTACGGGAAATCGACAAAAGATTATGGAAATAATCCTCATAGGCAAGTGTATAA
CATAGTCCTACTCGGAAAAGGATCGGGATTCAGGATTGTACTGTATCGTGGTGAGTTCGGTATCTCCGAGTTCTACTTGG
AGATCAAGATCATCGTACCAACGTACCCTAAAACCCTATTCATCCTGTCTTGGGGTATCCACGTCGGCAATGAACGTGGA
AAGAGGAACAGAGGAATGACTAGTCTGCCCAGTATAACCGCTGGCACTGTGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis