Browse Element(s) Details


OsAffx.20797.1.S1_at

Description tigr:9638.m00138
TID=OsAffx.20797.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0234011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02270NANA10+797132..797852expressed protein
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein
LOC_Os10g02340OsAffx.20797.1.S1_at11/1110+820900..823141POT family protein, expressed
LOC_Os10g02340Os.4008.2.S1_x_at1/1110+820900..823141POT family protein, expressed
LOC_Os10g02350Os.46462.1.S1_at11/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02350Os.46462.2.S1_x_at9/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02360Os.21379.1.S1_at11/1110+832317..834357Protein kinase domain containing protein, expressed
LOC_Os10g02369NANA10+847135..847360NA

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20797.1.S1_at--1049--4591Chr10:822584..822608 (25 bp)
GCGACGCTGTCCACCTTCGAGGTGG
LOC_Os10g02340
OsAffx.20797.1.S1_at--722--8791Chr10:822840..822864 (25 bp)
TGTTCACCAGCGTCGGCCTGCTCGA
LOC_Os10g02340
OsAffx.20797.1.S1_at--254--4571Chr10:822881..822905 (25 bp)
GCGCCCGACACCATAAAGAGCCTGT
LOC_Os10g02340
OsAffx.20797.1.S1_at--665--9831Chr10:822894..822918 (25 bp)
TAAAGAGCCTGTGCACCGCGGTGAG
LOC_Os10g02340
OsAffx.20797.1.S1_at--349--7531Chr10:822929..822953 (25 bp)
GTGGCGGCCGGAAGCTACCTCAACT
LOC_Os10g02340
OsAffx.20797.1.S1_at--1145--7711Chr10:823010..823034 (25 bp)
GGGTGGATTCCCGACGATCTCAATC
LOC_Os10g02340
OsAffx.20797.1.S1_at--36--6431Chr10:823025..823049 (25 bp)
GATCTCAATCGAGGACGGCTGGATT
LOC_Os10g02340
OsAffx.20797.1.S1_at--252--8351Chr10:823041..823065 (25 bp)
GGCTGGATTGCTTCTTCTGGCTCAT
LOC_Os10g02340
OsAffx.20797.1.S1_at--1151--9611Chr10:823062..823086 (25 bp)
TCATGTTCGGCCTCAGCTGTGTAAA
LOC_Os10g02340
OsAffx.20797.1.S1_at--240--9671Chr10:823074..823098 (25 bp)
TCAGCTGTGTAAACCTGCTGGCGTT
LOC_Os10g02340
OsAffx.20797.1.S1_at--1001--4271Chr10:823087..823111 (25 bp)
CCTGCTGGCGTTCGTTTACTCTTCT
LOC_Os10g02340
Target Sequence 
GCGACGCTGTCCACCTTCGAGGTGGTCAGCATCCTCCTCTGCGTCCCGGCCTACGACGCCGCGCTGATGCCGCTCGCCCG
CCGCGTCACCGGCGACCGCCGCGGCCTGTCGCAGCTGCAGCGGCTCGGCGTCGGGCTGGCGCTGTCGGCGCTGGCCATGG
CGTACTCGGCGCTGCTCGAGGCGAGCCGCCGGCGGCGCGCGGCGACGAGCATCGTGTGGCAGGCGCCGTCGTACATGGCG
CTGGGCGCGGCGGAGGTGTTCACCAGCGTCGGCCTGCTCGAGTTCTTCTACGACCAGGCGCCCGACACCATAAAGAGCCT
GTGCACCGCGGTGAGCCTCGTCGCCGTGGCGGCCGGAAGCTACCTCAACTCGGCCATCGTCGCGGTGGTCGCGTGGGCGA
CGGCGCCGGAGAAGGGCGGCGGCGGCGGGTGGATTCCCGACGATCTCAATCGAGGACGGCTGGATTGCTTCTTCTGGCTC
ATGTTCGGCCTCAGCTGTGTAAACCTGCTGGCGTTCGTTTACTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis