Browse Element(s) Details


Os.21379.1.S1_at

Description gb:AK105108.1
DB_XREF= gi:32990317
TID=Os.21379.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative wall-associated protein kinase (OSJNBb0012A20.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F06, full insert sequence.
FL= gb:AK105108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0236011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein
LOC_Os10g02340OsAffx.20797.1.S1_at11/1110+820900..823141POT family protein, expressed
LOC_Os10g02340Os.4008.2.S1_x_at1/1110+820900..823141POT family protein, expressed
LOC_Os10g02350Os.46462.1.S1_at11/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02350Os.46462.2.S1_x_at9/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02360Os.21379.1.S1_at11/1110+832317..834357Protein kinase domain containing protein, expressed
LOC_Os10g02369NANA10+847135..847360NA
LOC_Os10g02380Os.4020.1.S1_at11/1110+850538..852711NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os10g02380OsAffx.32259.1.S1_x_at1/1110+850538..852711NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os10g02390Os.46268.1.S1_at11/1110+853638..855101NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02400NANA10+857827..858489transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21379.1.S1_at--1072--6231Chr10:832573..832597 (25 bp)
GATGGAGCTTCACTGGTAACTAATT
LOC_Os10g02360
Os.21379.1.S1_at--759--5651Chr10:832505..832529 (25 bp)
GACAGTACACTTGGTTCACTCTAAG
LOC_Os10g02360
Os.21379.1.S1_at--360--7891Chr10:832493..832517 (25 bp)
GGTTCACTCTAAGTGATCGTGTACA
LOC_Os10g02360
Os.21379.1.S1_at--1133--6391Chr10:832479..832503 (25 bp)
GATCGTGTACAAGCATTGTGTGTGA
LOC_Os10g02360
Os.21379.1.S1_at--484--10411Chr10:832443..832467 (25 bp)
TTATTTGTTACCAGAACATCTTGCA
LOC_Os10g02360
Os.21379.1.S1_at--1156--251Chr10:832416..832440 (25 bp)
ATATGCTGCCATTCGGATGATGTTA
LOC_Os10g02360
Os.21379.1.S1_at--107--6291Chr10:832398..832422 (25 bp)
GATGTTATCTGAACTTGCATGCAAT
LOC_Os10g02360
Os.21379.1.S1_at--1119--651Chr10:832380..832404 (25 bp)
ATGCAATCTGCTTCTTATGCGGTCG
LOC_Os10g02360
Os.21379.1.S1_at--332--10131Chr10:832365..832389 (25 bp)
TATGCGGTCGATCCCATGATGTTTA
LOC_Os10g02360
Os.21379.1.S1_at--1082--6371Chr10:832356..832380 (25 bp)
GATCCCATGATGTTTATCTGAACTT
LOC_Os10g02360
Os.21379.1.S1_at--563--3851Chr10:832339..832363 (25 bp)
CTGAACTTGGTTCTACTAGTGGATA
LOC_Os10g02360
Target Sequence 
GATGGAGCTTCACTGGTAACTAATTAAATCTCATATATATCACTAGAGCTGATCAAGGAACTGAACTTGACAGTACACTT
GGTTCACTCTAAGTGATCGTGTACAAGCATTGTGTGTGAATTGTAATATATTATTTGTTACCAGAACATCTTGCANTATA
TGCTGCCATTCGGATGATGTTATCTGAACTTGCATGCAATCTGCTTCTTATGCGGTCGATCCCATGATGTTTATCTGAAC
TTGGTTCTACTAGTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis