Browse Element(s) Details


Os.4020.1.S1_at

Description gb:AK059636.1
DB_XREF= gi:32969654
TID=Os.4020.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NADPH-dependent oxidoreductase (OSJNBb0012A20.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A09, full insert sequence.
FL= gb:AK061106.1 gb:AK109414.2 gb:AK102609.1 gb:AK059636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0238011/11NADH-dependent oxidoreductase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02350Os.46462.1.S1_at11/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02350Os.46462.2.S1_x_at9/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02360Os.21379.1.S1_at11/1110+832317..834357Protein kinase domain containing protein, expressed
LOC_Os10g02369NANA10+847135..847360NA
LOC_Os10g02380Os.4020.1.S1_at11/1110+850538..852711NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os10g02380OsAffx.32259.1.S1_x_at1/1110+850538..852711NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os10g02390Os.46268.1.S1_at11/1110+853638..855101NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02400NANA10+857827..858489transposon protein, putative, unclassified
LOC_Os10g02410OsAffx.18088.1.S1_at11/1110+864509..864727hypothetical protein
LOC_Os10g02420NANA10+868476..871310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g02430OsAffx.20387.1.S1_x_at1/1110+871563..874153transposon protein, putative, unclassified
LOC_Os10g02440Os.25754.2.S1_x_at3/1110+875109..876592hypothetical protein
LOC_Os10g02440Os.53479.1.S1_x_at1/1110+875109..876592hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4020.1.S1_at--916--9431Chr10:852185..852209 (25 bp)
TCTGGACATTTTCAACTGGGAGCTC
LOC_Os10g02380
Os.4020.1.S1_at--1027--8491Chr10:852268..852292 (25 bp)
TGGAATTCATCTCTGACCATGGGCC
LOC_Os10g02380
Os.4020.1.S1_at--806--5831Chr10:852282..852306 (25 bp)
GACCATGGGCCTTACAAATCAGTTG
LOC_Os10g02380
Os.4020.1.S1_at--894--6251Chr10:852318..852342 (25 bp)
GATGGTGACGTCTAGCAAGCTACTT
LOC_Os10g02380
Os.4020.1.S1_at--165--7971Chr10:852390..852414 (25 bp)
GGATCTATCTTAATTATGTGCGGCA
LOC_Os10g02380
Os.4020.1.S1_at--807--4191Chr10:852436..852460 (25 bp)
CCGTACACGTTCTGCGATCAATTAA
LOC_Os10g02380
Os.4020.1.S1_at--268--3171Chr10:852484..852508 (25 bp)
AATTGCTGTATACCTATCCACTTAT
LOC_Os10g02380
Os.4020.1.S1_at--492--9811Chr10:852510..852534 (25 bp)
TAAAACACGTCGACACGTTCACGAA
LOC_Os10g02380
Os.4020.1.S1_at--400--7891Chr10:852539..852563 (25 bp)
GGTTACTCCCCTGGTATACATATAT
LOC_Os10g02380
Os.4020.1.S1_at--43--291Chr10:852562..852586 (25 bp)
ATAGGTCCATAGATGATGCATTGCA
LOC_Os10g02380
Os.4020.1.S1_at--78--1851Chr10:852657..852681 (25 bp)
ACGACTCTTGATCTATTTTTGTTGG
LOC_Os10g02380
Target Sequence 
TCTGGACATTTTCAACTGGGAGCTCACAGATGAAGAGAGGGAGAGGATCAGTCAGCTGCCCCAACTGAGGGGCCTGCCTG
GATTGGAATTCATCTCTGACCATGGGCCTTACAAATCAGTTGAAGATTTGTGGGATGGTGACGTCTAGCAAGCTACTTAG
ATACAGTGGAGTATATATCTAAATAATCATGATGGATCATGATGTGGATCTATCTTAATTATGTGCGGCAGGCATGGGCA
CGGCACCATTCCCGTACACGTTCTGCGATCAATTAATGTATGGACCATACATGTATATTAATTGCTGTATACCTATCCAC
TTATTTAAAACACGTCGACACGTTCACGAAAAATGGTTACTCCCCTGGTATACATATATAGGTCCATAGATGATGCATTG
CAAATTTAATTAGCTACCTAGAAATTTATTTAGGATGCTAAATTTAAGATGGTAGATTTAGTTTAAATGTATACGACTCT
TGATCTATTTTTGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis