Browse Element(s) Details


Os.46462.1.S1_at

Description gb:AK099727.1
DB_XREF= gi:32984936
TID=Os.46462.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endosomal protein (OSJNBb0012A20.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089E14, full insert sequence.
FL= gb:AK099727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0235011/11Endomembrane protein 70 containing protein, expressed
LOC_Os03g223201/11Utp14 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein
LOC_Os10g02340OsAffx.20797.1.S1_at11/1110+820900..823141POT family protein, expressed
LOC_Os10g02340Os.4008.2.S1_x_at1/1110+820900..823141POT family protein, expressed
LOC_Os10g02350Os.46462.1.S1_at11/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02350Os.46462.2.S1_x_at9/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02360Os.21379.1.S1_at11/1110+832317..834357Protein kinase domain containing protein, expressed
LOC_Os10g02369NANA10+847135..847360NA
LOC_Os10g02380Os.4020.1.S1_at11/1110+850538..852711NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os10g02380OsAffx.32259.1.S1_x_at1/1110+850538..852711NADH-dependent oxidoreductase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006364biological_processrRNA processing
GO:0006810biological_processtransport
GO:0006944biological_processmembrane fusion
GO:0009524cellular_componentphragmoplast
GO:0016021cellular_componentintegral to membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46462.1.S1_at--587--5691Chr10:824589..824613 (25 bp)
GACTATGCATAGTTGGTGAAGGCCA
LOC_Os10g02350
Os.46462.1.S1_at--96--1611Chr10:824543..824567 (25 bp)
AGCTGATGCAATTGATTAGCCATTA
LOC_Os10g02350
Os.46462.1.S1_at--906--7372Chr03:12770973..12771309 (25 bp)
GTGAGCAGTAAATCTGTTCCATTTT
LOC_Os03g22320
Os.46462.1.S1_at--513--3051Chr10:824492..824516 (25 bp)
AATCTGTTCCATTTTGTACGACTGA
LOC_Os10g02350
Os.46462.1.S1_at--1145--6251Chr10:824469..824493 (25 bp)
GATGTGGTGAATTTTGCGGCTCTTT
LOC_Os10g02350
Os.46462.1.S1_at--128--791Chr10:824440..824464 (25 bp)
ATGTGTTATGTCCTTGTAATTTGCA
LOC_Os10g02350
Os.46462.1.S1_at--9--4971Chr10:824418..824442 (25 bp)
GCATCATTGTTGAAGGAATCGTGCT
LOC_Os10g02350
Os.46462.1.S1_at--911--4891Chr10:824396..824420 (25 bp)
GCTTAGCAATTTTACACCATTCCAT
LOC_Os10g02350
Os.46462.1.S1_at--706--3591Chr10:824379..824403 (25 bp)
CATTCCATTCCCTTGATGTTGAGAG
LOC_Os10g02350
Os.46462.1.S1_at--776--5151Chr10:824320..824344 (25 bp)
GCAACCTCTTGAATATTATAGCCTG
LOC_Os10g02350
Os.46462.1.S1_at--792--291Chr10:824303..824327 (25 bp)
ATAGCCTGAAAGCTTGATCCGAAAC
LOC_Os10g02350
Target Sequence 
GACTATGCATAGTTGGTGAAGGCCAGAGATGAAAGAAACCAGAGGTAGCTGATGCAATTGATTAGCCATTATTCATAGCA
AAAGGTAGTGAGCAGTAAATCTGTTCCATTTTGTACGACTGATGTGGTGAATTTTGCGGCTCTTTTTTTATGTGTTATGT
CCTTGTAATTTGCATCATTGTTGAAGGAATCGTGCTTAGCAATTTTACACCATTCCATTCCCTTGATGTTGAGAGACAGT
GCTGATGAATTTTGTAAGAATTCAGAGGAGCAACCTCTTGAATATTATAGCCTGAAAGCTTGATCCGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis