Browse Element(s) Details

OsAffx.32259.1.S1_x_at

Description

gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32259.1
CNT=1
FEA=DNA_40
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF230 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39730	11/11	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os02g24600	10/11	NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os01g65910	8/11	Apocytochrome F, C-terminal family protein
LOC_Os10g02380	1/11	NADH-dependent oxidoreductase 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39680	Os.50203.1.S1_at	11/11	6	+	23555510..23558218	transposon protein, putative, unclassified, expressed
LOC_Os06g39690	Os.11654.1.S1_at	11/11	6	+	23558711..23562074	SOUL heme-binding protein, expressed
LOC_Os06g39700	Os.26455.2.S1_s_at	11/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32333.1.S1_x_at	11/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32331.1.S1_x_at	10/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32332.1.S1_x_at	7/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32334.1.S1_x_at	5/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39710	Os.26592.1.S1_s_at	11/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710	Os.26592.3.S1_x_at	7/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710	Os.26592.2.A1_s_at	7/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710	Os.26592.2.A1_x_at	3/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39720	OsAffx.32314.1.S1_at	7/11	6	+	23573779..23574126	ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os06g39720	Os.48031.1.S1_x_at	6/11	6	+	23573779..23574126	ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os06g39730	OsAffx.32233.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32259.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.26050.2.S2_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32256.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32255.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.26509.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.26050.37.S1_s_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32258.1.S1_x_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.26509.1.S1_s_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32234.1.S1_x_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.29056.1.S1_s_at	9/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32257.1.S1_x_at	8/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.47372.1.S1_x_at	7/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.47372.1.S1_at	7/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32260.1.S1_at	6/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32200.1.S1_x_at	2/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39740	OsAffx.30475.9.S1_s_at	10/11	6	+	23588446..23590352	ATP synthase beta chain, putative
LOC_Os06g39740	OsAffx.30475.5.S1_x_at	9/11	6	+	23588446..23590352	ATP synthase beta chain, putative
LOC_Os06g39740	OsAffx.30475.1.S1_s_at	9/11	6	+	23588446..23590352	ATP synthase beta chain, putative
LOC_Os06g39750	Os.9286.1.S1_at	11/11	6	+	23607741..23610099	Fatty acid elongase, putative, expressed
LOC_Os06g39750	Os.9286.1.S1_s_at	11/11	6	+	23607741..23610099	Fatty acid elongase, putative, expressed
LOC_Os06g39760	Os.15810.2.S1_x_at	11/11	6	+	23612191..23620156	Serine-threonine kinase receptor-associated protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
GO:0009775	biological_process	photosynthetic electron transport in cytochrome b6/f
GO:0015977	biological_process	carbon utilization by fixation of carbon dioxide
GO:0005739	cellular_component	mitochondrion
GO:0009507	cellular_component	chloroplast
GO:0009512	cellular_component	cytochrome b6f complex
GO:0030095	cellular_component	photosystem II (sensu Viridiplantae)
GO:0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
GO:0016984	molecular_function	ribulose-bisphosphate carboxylase activity
GO:0045158	molecular_function	electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.32259.1.S1_x_at--468--821	6	Chr12:5635093..5635117 (25 bp)	GGAATACCAGGCAATCCCAAACTCT	NONE
OsAffx.32259.1.S1_x_at--551--437	7	Chr12:5635109..5635133 (25 bp)	CCAAACTCTCTTAACTGCTATTCAA	NONE
OsAffx.32259.1.S1_x_at--316--1	6	Chr12:5635169..5635193 (25 bp)	AGACCTTTTTATCTTGGACGAAATG	NONE
OsAffx.32259.1.S1_x_at--223--647	6	Chr12:5635272..5635296 (25 bp)	GATAATGAGGGTCATCTCCATATCA	NONE
OsAffx.32259.1.S1_x_at--446--433	9	Chr12:5635289..5635313 (25 bp)	CCATATCATTTTGCATTTCTCGACA	NONE
OsAffx.32259.1.S1_x_at--864--387	9	Chr12:5635322..5635346 (25 bp)	CTGTTTGGCTATTCTAAGTGGTTCT	NONE
OsAffx.32259.1.S1_x_at--996--1035	8	Chr12:5635456..5635480 (25 bp)	TTTTTGTTGGATTTCACTCCACCCG	NONE
OsAffx.32259.1.S1_x_at--136--817	7	Chr12:5635487..5635511 (25 bp)	GGAACTACTAATTCGTTGGGTCTAT	NONE
OsAffx.32259.1.S1_x_at--486--973	7	Chr12:5635511..5635535 (25 bp)	TAACGATCTTGGATGGGTTCCTAAC	NONE
OsAffx.32259.1.S1_x_at--686--787	8	Chr12:5635526..5635550 (25 bp)	GGTTCCTAACGAGCTAATTTTCACT	NONE
OsAffx.32259.1.S1_x_at--210--695	7	Chr12:5635561..5635585 (25 bp)	GTAGTTTTCCTGTGATTCTAGATAC	NONE

Target Sequence

GGAATACCAGGCAATCCCAAACTCTCTTAACTGCTATTCAAGAGAAAAGAGTTCTAGAAAGATTCATGGAATTAGAAGAC
CTTTTTATCTTGGACGAAATGATAAAAGAGAAACCGAATACACATGTACAAAACCCCCCTATAGGAATACGCAAGGAAAT
AATACAATTGGCCAAAATAGATAATGAGGGTCATCTCCATATCATTTTGCATTTCTCGACAAATATAATCTGTTTGGCTA
TTCTAAGTGGTTCTTTTTTTCTGGGTAAAGAGGAACTTGTTATTTTGAATTCTTGGGTTCAGGAATTCTTCTATAACTTA
AATGACTCAGTAAAAGCTTTTTTTATTCTTTTAGTTACTGATTTTTTTGTTGGATTTCACTCCACCCGCGGTTGGGAACT
ACTAATTCGTTGGGTCTATAACGATCTTGGATGGGTTCCTAACGAGCTAATTTTCACTATTTTTGTTTGTAGTTTTCCTG
TGATTCTAGATAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis