Browse Element(s) Details


OsAffx.26050.37.S1_s_at

Description tigr:9633.m03286
TID=OsAffx.26050.37
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribulose bisphosphate carboxylase large chain, N-terminal domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3533011/11Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g1058011/11Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os01g5802011/11Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os06g3973010/11Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os10g212807/11Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35274Os.49586.1.S1_a_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.49586.1.S2_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.12539.1.S1_at9/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274OsAffx.11744.1.S1_x_at1/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein
LOC_Os05g35320OsAffx.30475.5.S1_x_at9/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35320OsAffx.30475.1.S1_s_at2/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35330OsAffx.26050.37.S1_s_at11/115+20890698..20891144Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os05g35340OsAffx.27176.1.S1_s_at11/115+20895356..20896726expressed protein
LOC_Os05g35340Os.7559.1.S1_at11/115+20895356..20896726expressed protein
LOC_Os05g35350OsAffx.4525.1.S1_at11/115+20902626..20903091hypothetical protein
LOC_Os05g35360OsAffx.4526.1.S1_at11/115+20906344..20915118Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g35370OsAffx.14973.1.S1_at10/115+20915376..20918109hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0009507cellular_componentchloroplast
GO:0009512cellular_componentcytochrome b6f complex
GO:0003735molecular_functionstructural constituent of ribosome
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26050.37.S1_s_at--566--6537Chr12:5613180..5613204 (25 bp)
GATTATAAATTGACTTACTACACCC
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--516--5257Chr12:5613303..5613327 (25 bp)
GAATCTTCTACTGGTACATGGACAA
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--949--9536Chr12:5613309..5613333 (25 bp)
TCTACTGGTACATGGACAACTGTTT
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--85--2174Chr12:5613324..5613348 (25 bp)
ACAACTGTTTGGACTGATGGACTTA
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--923--6236Chr12:5613339..5613363 (25 bp)
GATGGACTTACCAGTCTTGATCGTT
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--1095--10456Chr12:5613346..5613370 (25 bp)
TTACCAGTCTTGATCGTTACAAAGG
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--1--6356Chr12:5613373..5613397 (25 bp)
GATGCTATCACATCGAGCCCGTTGT
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--883--3695Chr12:5613377..5613401 (25 bp)
CTATCACATCGAGCCCGTTGTTGGG
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--734--256Chr12:5613415..5613439 (25 bp)
ATATCGCTTATGTAGCTTATCCATT
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--980--6955Chr12:5613426..5613450 (25 bp)
GTAGCTTATCCATTAGACCTATTTG
LOC_Os12g10580
OsAffx.26050.37.S1_s_at--811--2495Chr12:5613468..5613492 (25 bp)
AACATGTTTACTTCCATTGTGGGTA
LOC_Os12g10580
Target Sequence 
GATTATAAATTGACTTACTACACCCCAGAGTACGAAACCAAGGACACTGATATCTTGGCAGCATTCCGAATAACTCCTCA
GCCGGGGGTTCCGCCCGAAGAAGCAGGGGCTGCAGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTTTGGACTG
ATGGACTTACCAGTCTTGATCGTTACAAAGGCCGATGCTATCACATCGAGCCCGTTGTTGGGGAGGATAATCAATATATC
GCTTATGTAGCTTATCCATTAGACCTATTTGAAGAGGGTTCCGTTACTAACATGTTTACTTCCATTGTGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26050.37.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis