Browse Element(s) Details


OsAffx.14972.1.S1_at

Description tigr:9633.m03284
TID=OsAffx.14972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3531011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35260Os.49517.1.S1_at11/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35260OsAffx.12617.1.S1_at3/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35274Os.49586.1.S1_a_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.49586.1.S2_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.12539.1.S1_at9/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274OsAffx.11744.1.S1_x_at1/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein
LOC_Os05g35320OsAffx.30475.5.S1_x_at9/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35320OsAffx.30475.1.S1_s_at2/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35330OsAffx.26050.37.S1_s_at11/115+20890698..20891144Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os05g35340OsAffx.27176.1.S1_s_at11/115+20895356..20896726expressed protein
LOC_Os05g35340Os.7559.1.S1_at11/115+20895356..20896726expressed protein
LOC_Os05g35350OsAffx.4525.1.S1_at11/115+20902626..20903091hypothetical protein
LOC_Os05g35360OsAffx.4526.1.S1_at11/115+20906344..20915118Glycosyl hydrolases family 35 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14972.1.S1_at--59--5011Chr05:20885615..20885639 (25 bp)
GCAGGCGTCCCGGTATTATCAGAGG
LOC_Os05g35310
OsAffx.14972.1.S1_at--1004--1031Chr05:20885637..20885661 (25 bp)
AGGTGCCGGCATTCATGTCATTCAT
LOC_Os05g35310
OsAffx.14972.1.S1_at--385--8811Chr05:20885709..20885733 (25 bp)
TGCTTCTGTTAACTAGTCTACCCGA
LOC_Os05g35310
OsAffx.14972.1.S1_at--880--3391Chr05:20885734..20885758 (25 bp)
CAGCTCTCAGAGGTATCGCAGGTAT
LOC_Os05g35310
OsAffx.14972.1.S1_at--749--6891Chr05:20885755..20885779 (25 bp)
GTATAACATTCGCTATTCCATCGCA
LOC_Os05g35310
OsAffx.14972.1.S1_at--757--10331Chr05:20885820..20885844 (25 bp)
TTTACGTGGTAAGGCTGACACCCCT
LOC_Os05g35310
OsAffx.14972.1.S1_at--382--2391Chr05:20885939..20885963 (25 bp)
AAACGGAGTCTTTGGTGGCCGCTGC
LOC_Os05g35310
OsAffx.14972.1.S1_at--822--8411Chr05:20885955..20885979 (25 bp)
GGCCGCTGCGGTATGCAAGACTGAT
LOC_Os05g35310
OsAffx.14972.1.S1_at--751--6611Chr05:20885995..20886019 (25 bp)
GTTGGAAGGTCTATTTGCAGCTCTC
LOC_Os05g35310
OsAffx.14972.1.S1_at--176--7251Chr05:20886030..20886054 (25 bp)
GTCCGGTTCGACTGCTGAAGCAATT
LOC_Os05g35310
OsAffx.14972.1.S1_at--903--6431Chr05:20886118..20886142 (25 bp)
GATCATCATCCCAGTATCTCAAATG
LOC_Os05g35310
Target Sequence 
GCAGGCGTCCCGGTATTATCAGAGGTGCCGGCATTCATGTCATTCATGGAATTCAATGCTCTAGCATTGGGGTTCTCCAT
ATCAGCAACAATGCTGCTTCTGTTAACTAGTCTACCCGACAGCTCTCAGAGGTATCGCAGGTATAACATTCGCTATTCCA
TCGCACTCGTGGAAACGGGGATTTTGGCTATGGTTAGCACCGTTGTTTACGTGGTAAGGCTGACACCCCTTCCAGCGGGT
GATTGGTATGAGTTTCTTCATTTGAAGGGAGATCTCCATTTCTTCTTGCGATCTATGATAATAATGTTTATCCTAATCGC
GAATAAACGGAGTCTTTGGTGGCCGCTGCGGTATGCAAGACTGATATACTCACAGTTTGGGTTGGAAGGTCTATTTGCAG
CTCTCCTTGGCCATCGTCCGGTTCGACTGCTGAAGCAATTGAGGTCCATATATCCATGGCAGAACATATTTGGCATTCTG
TCTAGTATTGTGATCTACGCCTTGATCATCATCCCAGTATCTCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis