Browse Element(s) Details


Os.49517.1.S1_at

Description gb:AK120642.1
DB_XREF= gi:37990265
TID=Os.49517.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154O20, full insert sequence.
FL= gb:AK120642.1 gb:AK105306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3526011/11PB1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35220OsAffx.4523.1.S1_at10/115+20846331..20847449hypothetical protein
LOC_Os05g35230OsAffx.27173.1.S1_at11/115+20847928..20850838expressed protein
LOC_Os05g35240Os.53577.1.S1_at11/115+20853038..20853878expressed protein
LOC_Os05g35250OsAffx.4524.1.S1_at11/115+20855445..20855856hypothetical protein
LOC_Os05g35260Os.49517.1.S1_at11/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35260OsAffx.12617.1.S1_at3/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35274Os.49586.1.S1_a_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.49586.1.S2_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.12539.1.S1_at9/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274OsAffx.11744.1.S1_x_at1/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49517.1.S1_at--755--2111Chr05:20858500..20858524 (25 bp)
ACATGGGCGGCAGCTCGCCTGTGCA
LOC_Os05g35260
Os.49517.1.S1_at--1012--7531Chr05:20858656..20858680 (25 bp)
GTGGCTACGTGCGAGGCAGCAACTA
LOC_Os05g35260
Os.49517.1.S1_at--438--1911Chr05:20858662..20858686 (25 bp)
ACGTGCGAGGCAGCAACTACGTGGC
LOC_Os05g35260
Os.49517.1.S1_at--742--7551Chr05:20858752..20858776 (25 bp)
GGGCCCCGCCGTACAACGAGATGCA
LOC_Os05g35260
Os.49517.1.S1_at--117--3031Chr05:20858787..20858811 (25 bp)
AATGCGACGACGATATGGGATTGAT
LOC_Os05g35260
Os.49517.1.S1_at--398--1551Chr05:20858825..20858849 (25 bp)
AGCTTGCTGACGTTGTGGTTTTTGC
LOC_Os05g35260
Os.49517.1.S1_at--526--291Chr05:20858864..20858888 (25 bp)
ATAGATGGATATGGATCGTGGATGC
LOC_Os05g35260
Os.49517.1.S1_at--92--1831Chr05:20858889..20858913 (25 bp)
ACGCGGCGTCGCAGTAATCTTGTTA
LOC_Os05g35260
Os.49517.1.S1_at--97--4631Chr05:20858894..20858918 (25 bp)
GCGTCGCAGTAATCTTGTTAGTAGT
LOC_Os05g35260
Os.49517.1.S1_at--684--5351Chr05:20858934..20858958 (25 bp)
GAAGAGGTCCAGTTTGCTGTAGAAC
LOC_Os05g35260
Os.49517.1.S1_at--669--6851Chr05:20858945..20858969 (25 bp)
GTTTGCTGTAGAACTATTGTTGTTC
LOC_Os05g35260
Target Sequence 
ACATGGGCGGCAGCTCGCCTGTGCACGCCGGCGCCGGCCACCTCGTCTCGCAGGGCGGCTTCCACAGCTACTACCACCCG
CACGGGCAGTACGCCCCGGCGCCCGTGCCGGTGCCGCACCACGCCGGCGTGGGGAGGTACGACACGCGTGGTGGTGGTGG
CTACGTGCGAGGCAGCAACTACGTGGCGGCGCCGCCGCCGCCGATGATGCCGGTGGCGNTCCGGTCCGGCCGGCCGGTCT
CCCGCGGCGGCGGGGCCCCGCCGTACAACGAGATGCACACGCNGAAGAATGCGACGACGATATGGGATTGATGNCCGTNC
GCCGGAGCTTGCTGACGTTGTGGTTTTTGCAGGGAGAGATGTAAATAGATGGATATGGATCGTGGATGCACGCGGCGTCG
CAGTAATCTTGTTAGTAGTTGTTTTTGCTGATGAGAAGAGGTCCAGTTTGCTGTAGAACTATTGTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis