Browse Element(s) Details


OsAffx.4523.1.S1_at

Description tigr:9633.m03274
TID=OsAffx.4523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3522010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35210OsAffx.14970.1.S1_at11/115+20830729..20831139hypothetical protein
LOC_Os05g35220OsAffx.4523.1.S1_at10/115+20846331..20847449hypothetical protein
LOC_Os05g35230OsAffx.27173.1.S1_at11/115+20847928..20850838expressed protein
LOC_Os05g35240Os.53577.1.S1_at11/115+20853038..20853878expressed protein
LOC_Os05g35250OsAffx.4524.1.S1_at11/115+20855445..20855856hypothetical protein
LOC_Os05g35260Os.49517.1.S1_at11/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35260OsAffx.12617.1.S1_at3/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35274Os.49586.1.S1_a_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.49586.1.S2_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.12539.1.S1_at9/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274OsAffx.11744.1.S1_x_at1/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4523.1.S1_at--652--8571Chr05:20847062..20847086 (25 bp)
TGGTATACCCCAGTTTACAACGAAG
LOC_Os05g35220
OsAffx.4523.1.S1_at--1023--6811Chr05:20847050..20847074 (25 bp)
GTTTACAACGAAGCTACTACCGTGG
LOC_Os05g35220
OsAffx.4523.1.S1_at--140--2031Chr05:20847035..20847059 (25 bp)
ACTACCGTGGTAATCATCAGTACAT
LOC_Os05g35220
OsAffx.4523.1.S1_at--41--9651Chr05:20847019..20847043 (25 bp)
TCAGTACATCTACAATGACGGCGTT
LOC_Os05g35220
OsAffx.4523.1.S1_at--591--1911NONE
ACGGCGTTGTGTCTACTGGTAAAAT
NONE
OsAffx.4523.1.S1_at--673--3111Chr05:20846490..20846513 (24 bp)
AATATCGTTGCGAGGAGCACTGATC
LOC_Os05g35220
OsAffx.4523.1.S1_at--506--8071Chr05:20846477..20846501 (25 bp)
GGAGCACTGATCACCCAAGAAGCAA
LOC_Os05g35220
OsAffx.4523.1.S1_at--1049--9391Chr05:20846403..20846427 (25 bp)
TCGTAATATGGACTCCTTGCTCCAG
LOC_Os05g35220
OsAffx.4523.1.S1_at--490--10711Chr05:20846387..20846411 (25 bp)
TTGCTCCAGCTTTACGTTGCACTAG
LOC_Os05g35220
OsAffx.4523.1.S1_at--403--10471Chr05:20846376..20846400 (25 bp)
TTACGTTGCACTAGTATCCCAGCAC
LOC_Os05g35220
OsAffx.4523.1.S1_at--1078--6891Chr05:20846363..20846387 (25 bp)
GTATCCCAGCACAAGCAATCTGCAG
LOC_Os05g35220
Target Sequence 
TGGTATACCCCAGTTTACAACGAAGCTACTACCGTGGTAATCATCAGTACATCTACAATGACGGCGTTGTGTCTACTGGT
AAAATATCGTTGCGAGGAGCACTGATCACCCAAGAAGCAAAGGAATGGAAGAAAGATCGATCCAAATTAATTGTTGAGAC
TAAACCAAATCGTAATATGGACTCCTTGCTCCAGCTTTACGTTGCACTAGTATCCCAGCACAAGCAATCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis