Browse Element(s) Details


Os.12539.1.S1_at

Description gb:AK106896.1
DB_XREF= gi:32992105
TID=Os.12539.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H01, full insert sequence.
FL= gb:AK106896.1 gb:AK070830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g352749/11Galactosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35220OsAffx.4523.1.S1_at10/115+20846331..20847449hypothetical protein
LOC_Os05g35230OsAffx.27173.1.S1_at11/115+20847928..20850838expressed protein
LOC_Os05g35240Os.53577.1.S1_at11/115+20853038..20853878expressed protein
LOC_Os05g35250OsAffx.4524.1.S1_at11/115+20855445..20855856hypothetical protein
LOC_Os05g35260Os.49517.1.S1_at11/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35260OsAffx.12617.1.S1_at3/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35274Os.49586.1.S1_a_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.49586.1.S2_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.12539.1.S1_at9/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274OsAffx.11744.1.S1_x_at1/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein
LOC_Os05g35320OsAffx.30475.5.S1_x_at9/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35320OsAffx.30475.1.S1_s_at2/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35330OsAffx.26050.37.S1_s_at11/115+20890698..20891144Ribulose bisphosphate carboxylase large chain precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12539.1.S1_at--616--7251Chr05:20862162..20862186 (25 bp)
GTCCGTCGACAGGATGAGGGCCATC
LOC_Os05g35274
Os.12539.1.S1_at--541--9391Chr05:20862071..20862095 (25 bp)
TCGATCGATGTGTACTGCAATACGT
LOC_Os05g35274
Os.12539.1.S1_at--603--6992Chr12:5114692..5114716 (23 bp)
GTACGTACACACACGCTAGCAGCTA
NONE
Os.12539.1.S1_at--213--1271Chr05:20861899..20861923 (25 bp)
AGATAGTCAGACGTGGCGTCCGGTC
LOC_Os05g35274
Os.12539.1.S1_at--1080--6031Chr05:20861863..20861887 (25 bp)
GAGATCGATGCTCGGCAACTGCACT
LOC_Os05g35274
Os.12539.1.S1_at--727--8371Chr05:20861819..20861843 (25 bp)
GGCGATTCACTCAATCTGTGTTCTA
LOC_Os05g35274
Os.12539.1.S1_at--729--9511Chr05:20861798..20861822 (25 bp)
TCTAAAATAGTACTCCCTTTGCCAT
LOC_Os05g35274
Os.12539.1.S1_at--1152--5571Chr05:20861696..20861720 (25 bp)
GAAATGAGCCTCACTGATACTCCAT
LOC_Os05g35274
Os.12539.1.S1_at--91--6491NONE
GATACTCCATCCGTGGGTAAGTCAT
NONE
Os.12539.1.S1_at--768--7691NONE
GGGTAAGTCATCTTGTCCTTTGTAG
NONE
Os.12539.1.S1_at--331--9591Chr05:20861657..20861681 (25 bp)
TCTTGTCCTTTGTAGTTTGTCTTCA
LOC_Os05g35274
Target Sequence 
GTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCGCCGTCTCGAACAACTTCGCCGCCGCCG
CCGCCGCATGATCGATCGATGTGTACTGCAATACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTAT
CTTACGGGGTTCCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAGAAATGGACTAATTATTCACTTGG
TTTATATGAACCATGGAGGTGTTAGATAGTCAGACGTGGCGTCCGGTCGATCGGTAGGCGAGATCGATGCTCGGCAACTG
CACTGCAAGGGGTAGTTTCAGGCGGCGATTCACTCAATCTGTGTTCTAAAATAGTACTCCCTTTGCCATAAANAAATACA
TATGACCATTTTAAAACGGANTNNGTAATTCTAATATTCTGGAAAACTTTAGTTGAGAGAAAAAGATGAAATGAGCCTCA
CTGATACTCCATCCGTGGGTAAGTCATCTTGTCCTTTGTAGTTTGTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis