Browse Element(s) Details


OsAffx.30475.1.S1_s_at

Description gb:AB037543.1
DB_XREF= gi:6815114
GEN=atpB
TID=OsAffx.30475.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa chloroplast atpB mRNA for ATP synthase beta subunit, complete cds.
PROD=ATP synthase beta subunit
FL= gb:AB037543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2127011/11ATP synthase beta chain, putative, expressed
LOC_Os03g5587411/11ATP synthase beta chain, putative
LOC_Os06g397409/11ATP synthase beta chain, putative
LOC_Os06g029808/11ATP synthase F1, epsilon subunit family protein
LOC_Os01g580005/11ATP synthase epsilon chain, putative, expressed
LOC_Os02g091604/11hypothetical protein
LOC_Os05g353202/11ATP synthase beta chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21220OsAffx.32194.1.S1_x_at11/1110+10495502..10504226DNA-directed RNA polymerase beta chain, putative
LOC_Os10g21220OsAffx.26050.8.S1_x_at11/1110+10495502..10504226DNA-directed RNA polymerase beta chain, putative
LOC_Os10g21220Os.26535.1.S1_x_at10/1110+10495502..10504226DNA-directed RNA polymerase beta chain, putative
LOC_Os10g21230OsAffx.32209.1.S1_x_at11/1110+10507764..10508374ATP synthase subunit C family protein
LOC_Os10g21230OsAffx.22955.2.S1_s_at11/1110+10507764..10508374ATP synthase subunit C family protein
LOC_Os10g21230Os.46135.1.S1_s_at11/1110+10507764..10508374ATP synthase subunit C family protein
LOC_Os10g21230Os.46135.1.S1_x_at6/1110+10507764..10508374ATP synthase subunit C family protein
LOC_Os10g21240OsAffx.30475.3.S1_s_at11/1110+10509980..10511503ATP synthase alpha chain, putative
LOC_Os10g21250OsAffx.32214.1.S1_x_at10/1110+10514768..10517020Photosystem I P700 chlorophyll a apoprotein A1, putative
LOC_Os10g21260OsAffx.26050.13.S1_x_at5/1110+10524288..10524713NAD, putative
LOC_Os10g21270OsAffx.30475.1.S1_s_at11/1110+10527489..10529335ATP synthase beta chain, putative, expressed
LOC_Os10g21270OsAffx.30475.5.S1_x_at9/1110+10527489..10529335ATP synthase beta chain, putative, expressed
LOC_Os10g21280OsAffx.26050.2.S2_x_at11/1110+10530028..10531336Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os10g21280OsAffx.26050.37.S1_s_at7/1110+10530028..10531336Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os10g21290Os.29056.1.S1_s_at9/1110+10535365..10536288Apocytochrome f precursor, putative
LOC_Os10g21290OsAffx.32260.1.S1_at7/1110+10535365..10536288Apocytochrome f precursor, putative
LOC_Os10g21300Os.48031.1.S1_x_at7/1110+10543366..10543713ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os10g21300OsAffx.32314.1.S1_at2/1110+10543366..10543713ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os10g21310Os.26592.2.A1_s_at11/1110+10544636..10546189Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os10g21310Os.26592.1.S1_s_at11/1110+10544636..10546189Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os10g21310Os.26592.3.S1_x_at11/1110+10544636..10546189Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os10g21310Os.26592.2.A1_x_at7/1110+10544636..10546189Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os10g21330OsAffx.32331.1.S1_x_at11/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330Os.26455.2.S1_s_at11/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330OsAffx.32332.1.S1_x_at11/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330OsAffx.32333.1.S1_x_at10/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330OsAffx.32334.1.S1_x_at5/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330Os.26455.1.S1_at5/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0005754cellular_componentproton-transporting ATP synthase, catalytic core (sensu Eukaryota)
GO:0009544cellular_componentchloroplast ATP synthase complex
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0015078molecular_functionhydrogen ion transporter activity
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30475.1.S1_s_at--777--6698Chr08:16395704..16395728 (25 bp)
GTTCTCCGGGAAAGTATGTTGGTCT
NONE
OsAffx.30475.1.S1_s_at--1102--9278Chr08:16395708..16395732 (25 bp)
TCCGGGAAAGTATGTTGGTCTTGCA
NONE
OsAffx.30475.1.S1_s_at--849--6619Chr06:23589790..23589814 (25 bp)
GTTGGTCTTGCAGAAACTATTAGGG
LOC_Os06g39740
OsAffx.30475.1.S1_s_at--570--6539Chr06:24553710..24553734 (25 bp)
GATTTCAACTAATCCTTTCCGGAGA
NONE
OsAffx.30475.1.S1_s_at--246--9719Chr06:24553714..24553738 (25 bp)
TCAACTAATCCTTTCCGGAGAATTA
NONE
OsAffx.30475.1.S1_s_at--1141--48710Chr08:16395793..16395817 (25 bp)
GCTTTTTATTTGGTGGGTAACATCG
NONE
OsAffx.30475.1.S1_s_at--532--86311Chr12:8527031..8527051 (21 bp)
TGGGTAACATCGATGAAGCTAGCAC
NONE
OsAffx.30475.1.S1_s_at--256--70510Chr12:8527031..8527054 (24 bp)
GTAACATCGATGAAGCTAGCACGAA
NONE
OsAffx.30475.1.S1_s_at--916--93710Chr12:8527036..8527060 (25 bp)
TCGATGAAGCTAGCACGAAAGCTAT
NONE
OsAffx.30475.1.S1_s_at--518--53910Chr12:8527041..8527065 (25 bp)
GAAGCTAGCACGAAAGCTATAAACT
NONE
OsAffx.30475.1.S1_s_at--260--50910Chr12:8527048..8527072 (25 bp)
GCACGAAAGCTATAAACTTAGAAGA
NONE
Target Sequence 
GTTCTCCGGGAAAGTATGTTGGTCTTGCAGAAACTATTAGGGGATTTCAACTAATCCTTTCCGGAGAATTAGANGGCCTA
CCCGAACAGGCTTTTTATTTGGTGGGTAACATCGATGAAGCTAGCACGAAAGCTATAAACTTAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30475.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis