Browse Element(s) Details


Os.26535.1.S1_x_at

Description gb:AK058964.1
DB_XREF= gi:32968982
TID=Os.26535.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C05, full insert sequence.
FL= gb:AK058964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2461011/11DNA-directed RNA polymerase beta chain, putative
LOC_Os02g2460011/11NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os04g1683011/11RNA polymerase beta' subunit-2, putative
LOC_Os10g2122010/11DNA-directed RNA polymerase beta chain, putative
LOC_Os03g359704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24590OsAffx.24407.2.S1_s_at11/112+14242909..14244224NADH dehydrogenase 2-like ORF 180, putative
LOC_Os02g24600Os.29056.1.S1_s_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600Os.29056.1.S2_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32261.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32263.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32260.1.S1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32262.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600Os.26535.1.S1_x_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32259.1.S1_x_at10/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.26050.13.S1_x_at4/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24610Os.26535.1.S1_x_at11/112+14261109..14263033DNA-directed RNA polymerase beta chain, putative
LOC_Os02g24620OsAffx.32194.1.S1_x_at10/112+14268249..14270687DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os02g24630OsAffx.30473.1.S1_x_at10/112+14280185..14281766Photosystem II D2 protein, putative, expressed
LOC_Os02g24640NANA2+14286558..14287907retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0006350biological_processtranscription
GO:0006354biological_processRNA elongation
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009512cellular_componentcytochrome b6f complex
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26535.1.S1_x_at--442--1355Chr10:10502635..10502659 (25 bp)
AGAGAACAAATATAGGCCCCGAGAG
LOC_Os10g21220
Os.26535.1.S1_x_at--1137--4194Chr10:10502651..10502675 (25 bp)
CCCCGAGAGGATAAATATGGCACTT
LOC_Os10g21220
Os.26535.1.S1_x_at--361--5714Chr04:9174268..9174292 (25 bp)
GACTCAGAGGACGAACATGGGACTT
LOC_Os04g16830
Os.26535.1.S1_x_at--1154--3394Chr10:10502733..10502756 (24 bp)
CAGAGGACGAATATGGGAACCCGGA
LOC_Os10g21220
Os.26535.1.S1_x_at--1014--7674Chr10:10502781..10502805 (25 bp)
GGGTTTTGATTGAGCATCGAGGAAC
LOC_Os10g21220
Os.26535.1.S1_x_at--314--10375Chr10:10502848..10502872 (25 bp)
TTTTTTCATTCTCCAAGAACTGCAT
LOC_Os10g21220
Os.26535.1.S1_x_at--82--5475Chr10:10502864..10502888 (25 bp)
GAACTGCATATCTTGCCGAGATCCT
LOC_Os10g21220
Os.26535.1.S1_x_at--854--6355Chr10:10502883..10502907 (25 bp)
GATCCTCATCCCTAAAGGTACTTGA
LOC_Os10g21220
Os.26535.1.S1_x_at--68--2254Chr10:10502944..10502968 (25 bp)
AAATACAAGAAGTCGGCTGGGTGGA
LOC_Os10g21220
Os.26535.1.S1_x_at--414--234Chr10:10503024..10503048 (25 bp)
ATATTCATTTTCCTGAAGAGGCGGA
LOC_Os10g21220
Os.26535.1.S1_x_at--1056--8494Chr10:10503061..10503085 (25 bp)
TGGCAGTTTGATACCACTAGAAAGA
LOC_Os10g21220
Target Sequence 
AGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTCAGAGGACGAACATGGGACTTTAGAGG
AAGACTCAGAGGAAGACTCAGAGGACGAATATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAG
CATCGAGGAACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCGGTTTTTTTTCATTCTCCAAGAACTGCATAT
CTTGCCGAGATCCTCATCCCTAAAGGTACTTGACAATAGTATTATTGGAGTGGATACACAACTCACAAAAAATACAAGAA
GTCGGCTGGGTGGATTGGTTCGAGTGAAGAGAAAAAAAAGCCATACGGAACTAAAAATCTTTTCTGGAGATATTCATTTT
CCTGAAGAGGCGGATAAGATATTAGGTGGCAGTTTGATACCACTAGAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26535.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis