Browse Element(s) Details


OsAffx.32194.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rpoB
TID=OsAffx.32194.1
CNT=1
FEA=DNA_15
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA polymerase beta subunit (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=RNA polymerase beta subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1682011/11DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os10g2122011/11DNA-directed RNA polymerase beta chain, putative
LOC_Os05g2286010/11DNA-directed RNA polymerase beta chain, putative
LOC_Os02g2462010/11DNA-directed RNA polymerase beta chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16820OsAffx.32194.1.S1_x_at11/114+9166559..9170019DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16830OsAffx.26050.8.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16830Os.26535.1.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16819OsAffx.32206.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819Os.26588.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.32206.1.S1_at9/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.8235.1.S1_x_at5/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16810NANA4+9190254..9197781retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0006354biological_processRNA elongation
GO:0009507cellular_componentchloroplast
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32194.1.S1_x_at--703--5235Chr10:10497612..10497636 (25 bp)
GAATAGCACCCTTTGATGAGAGATA
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--401--2756Chr10:10497754..10497777 (24 bp)
AAGAACAGGAGACCCCTTCGAACAG
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--360--5514Chr10:10497832..10497856 (25 bp)
GAAAATCCACGGACGCTCTACTGGG
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--606--8655Chr10:10497853..10497877 (25 bp)
TGGGCCCTATTCACTTGTTACACAA
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--890--7935Chr10:10497947..10497971 (25 bp)
GGATTTGGTGTTGCTCATATTTTAC
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--849--475Chr10:10497991..10498015 (25 bp)
ATCTGATCATCTTATAGCTCGCCAA
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--216--1194Chr10:10498048..10498072 (25 bp)
AGTACCTAATCACGAGGATCCTCCA
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--886--7977Chr10:10498063..10498087 (25 bp)
GGATCCTCCAGAATCTTTTCGAGTG
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--366--5976Chr10:10498095..10498119 (25 bp)
GAGAACTACGATCTTTGGCTCTAGA
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--1010--8315Chr10:10498111..10498135 (25 bp)
GGCTCTAGAACTGAACCATTTCCTT
LOC_Os10g21220
OsAffx.32194.1.S1_x_at--626--5436Chr10:10498123..10498147 (25 bp)
GAACCATTTCCTTGTATCTCAGAAG
LOC_Os10g21220
Target Sequence 
GAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAA
CAAACAAAAAATCCGTGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCCTT
CGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGATGAGAAAATCCACGGACGCTCTA
CTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGAGGAAGAGCCAAGCAAGGGGGACAACGAATAGGAGAAATGGAA
GTTTGGGCTTTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATACTTACTTATAAATCTGATCATCTTATAGCTCG
CCAAGAAATACTTAACGCTACGATCTGGGGAAAACGAGTACCTAATCACGAGGATCCTCCAGAATCTTTTCGAGTGCTTG
TTCGAGAACTACGATCTTTGGCTCTAGAACTGAACCATTTCCTTGTATCTCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32194.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis