Browse Element(s) Details


OsAffx.26050.8.S1_x_at

Description gb:NM_190860.1
DB_XREF= gi:34908803
GEN=P0557A01.12
TID=OsAffx.26050.8
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) RNA polymerase beta subunit-1 (P0557A01.12), mRNA.
PROD=RNA polymerase beta subunit-1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1683011/11RNA polymerase beta' subunit-2, putative
LOC_Os10g2122011/11DNA-directed RNA polymerase beta chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16820OsAffx.32194.1.S1_x_at11/114+9166559..9170019DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16830OsAffx.26050.8.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16830Os.26535.1.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16819OsAffx.32206.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819Os.26588.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.32206.1.S1_at9/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.8235.1.S1_x_at5/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16810NANA4+9190254..9197781retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0006354biological_processRNA elongation
GO:0009507cellular_componentchloroplast
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26050.8.S1_x_at--823--6739Chr11:4844037..4844061 (25 bp)
GTTCATCTACCTTTATCCTTGGAAG
NONE
OsAffx.26050.8.S1_x_at--990--3736Chr10:10499728..10499752 (25 bp)
CTCAGGCGGAAGCTCGTTTACTTAT
LOC_Os10g21220
OsAffx.26050.8.S1_x_at--364--10315Chr10:10499755..10499779 (25 bp)
TTTCTCATATGAATCTCCTATCTCC
LOC_Os10g21220
OsAffx.26050.8.S1_x_at--813--7655Chr10:10499788..10499812 (25 bp)
GGGATCCTATTTGCGTACCAACCCA
LOC_Os10g21220
OsAffx.26050.8.S1_x_at--476--6975Chr10:10499802..10499826 (25 bp)
GTACCAACCCAAGACATGCTTATCG
LOC_Os10g21220
OsAffx.26050.8.S1_x_at--217--5255Chr10:10499952..10499976 (25 bp)
GAATCTCTTTTTTCTAGTTCCTATG
LOC_Os10g21220
OsAffx.26050.8.S1_x_at--459--9255Chr10:10499970..10499994 (25 bp)
TCCTATGATGCACTGGGAGCTTATA
LOC_Os10g21220
OsAffx.26050.8.S1_x_at--264--1156Chr10:10500018..10500042 (25 bp)
AGTCCCTTGTGGCTCCGATGGAAAC
LOC_Os10g21220
OsAffx.26050.8.S1_x_at--32--3716Chr10:10500042..10500066 (25 bp)
CTAGATCAACGCGTCATTGGGTTAA
LOC_Os10g21220
OsAffx.26050.8.S1_x_at--419--6057Chr10:10500114..10500138 (25 bp)
GAGATTTATGCCCACTATCTAGTAG
LOC_Os10g21220
OsAffx.26050.8.S1_x_at--1013--10194Chr10:10500167..10500191 (25 bp)
TATATACATTCGCACCACTCTTGGT
LOC_Os10g21220
Target Sequence 
GTTCATCTACCTTTATCCTTGGAAGCTCAGGCGGAAGCTCGTTTACTTATGTTTTCTCATATGAATCTCCTATCTCCCGC
TATTGGGGATCCTATTTGCGTACCAACCCAAGACATGCTTATCGGACTTTATGTATTAACGATTGGAAACCGTCGAGGTA
TTTGTGCAAATAGATATAATAGTTGCGGAAACTATCCAAACCAAAAAGTAAATTACAATAATAATAATCCTAAGTATACG
AAAGATAAAGAATCTCTTTTTTCTAGTTCCTATGATGCACTGGGAGCTTATAGACAGAAACAAATCTGTTTAGACAGTCC
CTTGTGGCTCCGATGGAAACTAGATCAACGCGTCATTGGGTTAAGAGAAGTTCCGATTGAAGTTCAATATGAATCTTTGG
GGACTTATCGTGAGATTTATGCCCACTATCTAGTAGTGGGAAATAGAAAAAAGGAAATCCGTTCTATATACATTCGCACC
ACTCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26050.8.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis