Browse Element(s) Details


OsAffx.8235.1.S1_x_at

Description tigr:9638.m03442
TID=OsAffx.8235.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g168195/11DNA-directed RNA polymerase beta chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16820OsAffx.32194.1.S1_x_at11/114+9166559..9170019DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16830OsAffx.26050.8.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16830Os.26535.1.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16819OsAffx.32206.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819Os.26588.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.32206.1.S1_at9/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.8235.1.S1_x_at5/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16810NANA4+9190254..9197781retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8235.1.S1_x_at--434--10495Chr10:10505405..10505429 (25 bp)
TTACAAATCTCGCTAGAACCACCCG
NONE
OsAffx.8235.1.S1_x_at--444--4355Chr10:10505423..10505447 (25 bp)
CCACCCGTTTTTTATCAGAAGCTTG
NONE
OsAffx.8235.1.S1_x_at--878--5935Chr10:10505510..10505534 (25 bp)
GAGCAGCGGATTTAGTAGCATCAGC
NONE
OsAffx.8235.1.S1_x_at--410--4975Chr10:10505527..10505551 (25 bp)
GCATCAGCTGCAATAAGGGCTCGTT
NONE
OsAffx.8235.1.S1_x_at--194--2875Chr10:10505541..10505565 (25 bp)
AAGGGCTCGTTGTCATTATGTTAAT
NONE
OsAffx.8235.1.S1_x_at--1067--8495Chr10:10505654..10505678 (25 bp)
TGGAAAAATTCCACCATCTCCCAAA
NONE
OsAffx.8235.1.S1_x_at--716--9975Chr10:10505712..10505736 (25 bp)
TACCTTGCAAAGATATCTCGGCGGG
NONE
OsAffx.8235.1.S1_x_at--583--1015Chr10:10505752..10505776 (25 bp)
AGGTTGCCTGACATTGTGATCGTCC
NONE
OsAffx.8235.1.S1_x_at--800--295Chr10:10505797..10505821 (25 bp)
ATAGCTCTTCGGGAATGTGCCATTT
NONE
OsAffx.8235.1.S1_x_at--1158--7915Chr10:10505825..10505849 (25 bp)
GGATTCCTACTATTTCTTTAGCCGA
NONE
OsAffx.8235.1.S1_x_at--1107--2235Chr10:10505853..10505877 (25 bp)
AAATTGTGACCCAGATCTCGCGAAT
NONE
Target Sequence 
TTACAAATCTCGCTAGAACCACCCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTCAGGGAAAAAGC
TTCTTAATTGTTGGTACCAAAAAAAGAGCAGCGGATTTAGTAGCATCAGCTGCAATAAGGGCTCGTTGTCATTATGTTAA
TAAAAAGTGGTTCAGTGGTATGTTAACGAATTGGTCGATTACTAAAACTAGACTTTCTCAATTTAGAGACTTAANAGCAG
AAGAAAAGATGGAAAAATTCCACCATCTCCCAAAAAGAGATGTGGCAATCTTGAAGAGAAAATTATCTACCTTGCAAAGA
TATCTCGGCGGGATCAAATATATGACGAGGTTGCCTGACATTGTGATCGTCCTCGATCAGCAAAAAGAGTATATAGCTCT
TCGGGAATGTGCCATTTTGGGGATTCCTACTATTTCTTTAGCCGATACAAATTGTGACCCAGATCTCGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8235.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis