Browse Element(s) Details


OsAffx.32206.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rpoC2
TID=OsAffx.32206.1
CNT=1
FEA=DNA_17
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA polymerase beta subunit-2 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=RNA polymerase beta subunit-2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1681911/11DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os05g2283011/11DNA-directed RNA polymerase beta chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16820OsAffx.32194.1.S1_x_at11/114+9166559..9170019DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16830OsAffx.26050.8.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16830Os.26535.1.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16819OsAffx.32206.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819Os.26588.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.32206.1.S1_at9/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.8235.1.S1_x_at5/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16810NANA4+9190254..9197781retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006354biological_processRNA elongation
GO:0009507cellular_componentchloroplast
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32206.1.S1_x_at--199--9814Chr10:10504413..10504437 (25 bp)
TAACCATAGCCCAAAGTCGTATCTC
NONE
OsAffx.32206.1.S1_x_at--823--9795Chr10:10504521..10504545 (25 bp)
TAACATCAAAAGTGCGGGTTTCCGA
NONE
OsAffx.32206.1.S1_x_at--542--2975Chr10:10504552..10504576 (25 bp)
AATGTCTAATGTTTTTTCACCTGGG
NONE
OsAffx.32206.1.S1_x_at--14--10515Chr10:10504580..10504604 (25 bp)
TTAATTGGACTATTGCGAGCAGAGC
NONE
OsAffx.32206.1.S1_x_at--895--8355Chr10:10504611..10504635 (25 bp)
GGCGGGCTTTGGATGAATCGATCTA
NONE
OsAffx.32206.1.S1_x_at--821--5235Chr10:10504675..10504699 (25 bp)
GAATACCCAAAGTTTCATATCTGAA
NONE
OsAffx.32206.1.S1_x_at--978--6056Chr10:10504722..10504746 (25 bp)
GAGTTTTAGCAAAAGCTGCCTTACG
NONE
OsAffx.32206.1.S1_x_at--15--1495Chr10:10504729..10504753 (25 bp)
AGCAAAAGCTGCCTTACGAGGTCGT
NONE
OsAffx.32206.1.S1_x_at--578--10156Chr10:10504801..10504825 (25 bp)
TATACCTGTTGGTACCGGATTCCAA
NONE
OsAffx.32206.1.S1_x_at--86--7917Chr10:10504817..10504841 (25 bp)
GGATTCCAAAAATTTGTGCACCGTT
NONE
OsAffx.32206.1.S1_x_at--795--156Chr10:10504928..10504952 (25 bp)
ATTAGTTTCTTCTGATTCTGACGTA
NONE
Target Sequence 
TAACCATAGCCCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAAGGGGTACAGATCCATAAT
AGACATATAGAGATTATTATACGCCAAGTAACATCAAAAGTGCGGGTTTCCGAAGATGGAATGTCTAATGTTTTTTCACC
TGGGGAATTAATTGGACTATTGCGAGCAGAGCGAGCAGGGCGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTAT
TGGGAATAACAAGGGTTTCCCTGAATACCCAAAGTTTCATATCTGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCA
AAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGG
TACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAAACAAGAACCTTTATTTCGAAATTCAAAAAAAAAAACTATTTG
CGTCGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTCTTCTGATTCTGACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32206.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis