Browse Element(s) Details


Os.26588.1.S1_x_at

Description gb:AK062380.1
DB_XREF= gi:32972398
TID=Os.26588.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) RNA polymerase beta subunit-2 5-partial (OSJNBa0034L04.39), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B08, full insert sequence.
FL= gb:AK062380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1681911/11DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os05g228308/11DNA-directed RNA polymerase beta chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16820OsAffx.32194.1.S1_x_at11/114+9166559..9170019DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16830OsAffx.26050.8.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16830Os.26535.1.S1_x_at11/114+9170763..9175810RNA polymerase beta' subunit-2, putative
LOC_Os04g16819OsAffx.32206.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819Os.26588.1.S1_x_at11/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.32206.1.S1_at9/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16819OsAffx.8235.1.S1_x_at5/114+9175897..9177163DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os04g16810NANA4+9190254..9197781retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006354biological_processRNA elongation
GO:0009507cellular_componentchloroplast
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26588.1.S1_x_at--822--5235Chr10:10504675..10504699 (25 bp)
GAATACCCAAAGTTTCATATCTGAA
NONE
Os.26588.1.S1_x_at--367--1215Chr10:10504703..10504727 (25 bp)
AGTTTTCAAGAAACTGCTCGAGTTT
NONE
Os.26588.1.S1_x_at--277--9955Chr10:10504743..10504767 (25 bp)
TACGAGGTCGTATTGATTGGTTGAA
NONE
Os.26588.1.S1_x_at--579--10156Chr10:10504801..10504825 (25 bp)
TATACCTGTTGGTACCGGATTCCAA
NONE
Os.26588.1.S1_x_at--87--7917Chr10:10504817..10504841 (25 bp)
GGATTCCAAAAATTTGTGCACCGTT
NONE
Os.26588.1.S1_x_at--1020--3135Chr10:10504927..10504951 (25 bp)
AATTAGTTTCTTCTGATTCTGACGT
NONE
Os.26588.1.S1_x_at--848--6576Chr10:10504941..10504965 (25 bp)
GATTCTGACGTAACAAACAATTTCT
NONE
Os.26588.1.S1_x_at--317--5996Chr10:10504968..10504992 (25 bp)
GAGACATCAGAATCACCATTTACCC
NONE
Os.26588.1.S1_x_at--159--5256Chr10:10504977..10505001 (25 bp)
GAATCACCATTTACCCCATTTATAT
NONE
Os.26588.1.S1_x_at--402--3714Chr10:10505039..10505063 (25 bp)
CTAGATTTTTGACCTTAGAACGCTA
NONE
Os.26588.1.S1_x_at--54--5455Chr10:10505056..10505080 (25 bp)
GAACGCTAAGAGGTTAGATTTTCTA
NONE
Target Sequence 
GAATACCCAAAGTTTCATATCTGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCNAAAAGCTGCCNTACGAGGTCGT
ATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGT
GCACCGTTACCCNCAAGACAAGAACCTTTATTTCGAAATTCAAAAAAAAAAANCTATTTGCGTCGGAAATGAGAGATATT
TTGTTTCTCCATACAGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTAC
CCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTT
AGATTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26588.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis