Browse Element(s) Details


OsAffx.32261.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32261.1
CNT=1
FEA=DNA_42
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF40; pot. PSII component (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2460011/11NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24560OsAffx.24406.1.S1_at11/112+14225581..14228700hypothetical protein
LOC_Os02g24570OsAffx.278.1.S1_at2/112+14230232..14233344retrotransposon protein, putative, unclassified
LOC_Os02g24580OsAffx.24407.2.S1_s_at11/112+14235337..14235816NAD, putative
LOC_Os02g24590OsAffx.24407.2.S1_s_at11/112+14242909..14244224NADH dehydrogenase 2-like ORF 180, putative
LOC_Os02g24600Os.29056.1.S1_s_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600Os.29056.1.S2_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32261.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32263.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32260.1.S1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32262.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600Os.26535.1.S1_x_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32259.1.S1_x_at10/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.26050.13.S1_x_at4/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24610Os.26535.1.S1_x_at11/112+14261109..14263033DNA-directed RNA polymerase beta chain, putative
LOC_Os02g24620OsAffx.32194.1.S1_x_at10/112+14268249..14270687DNA-directed RNA polymerase beta chain, putative, expressed
LOC_Os02g24630OsAffx.30473.1.S1_x_at10/112+14280185..14281766Photosystem II D2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0005739cellular_componentmitochondrion
GO:0009512cellular_componentcytochrome b6f complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32261.1.A1_at--484--5537Chr09:21929785..21929809 (25 bp)
GAAAACACCTATTAAACCAATCACA
NONE
OsAffx.32261.1.A1_at--398--2178Chr09:21929789..21929813 (25 bp)
ACACCTATTAAACCAATCACAGCAA
NONE
OsAffx.32261.1.A1_at--1039--138Chr12:5637860..5637884 (25 bp)
ATTAAACCAATCACAGCAATACCGG
NONE
OsAffx.32261.1.A1_at--448--338Chr12:5637863..5637887 (25 bp)
AAACCAATCACAGCAATACCGGTTA
NONE
OsAffx.32261.1.A1_at--344--3198Chr12:5637867..5637891 (25 bp)
CAATCACAGCAATACCGGTTACAGT
NONE
OsAffx.32261.1.A1_at--582--379Chr12:5637869..5637893 (25 bp)
ATCACAGCAATACCGGTTACAGTAC
NONE
OsAffx.32261.1.A1_at--385--2058Chr12:5637872..5637896 (25 bp)
ACAGCAATACCGGTTACAGTACCTA
NONE
OsAffx.32261.1.A1_at--106--3419Chr12:5637873..5637897 (25 bp)
CAGCAATACCGGTTACAGTACCTAT
NONE
OsAffx.32261.1.A1_at--912--5199Chr12:5637875..5637899 (25 bp)
GCAATACCGGTTACAGTACCTATCA
NONE
OsAffx.32261.1.A1_at--342--2379Chr12:5637877..5637901 (25 bp)
AATACCGGTTACAGTACCTATCAGC
NONE
OsAffx.32261.1.A1_at--562--9959Chr12:5637879..5637903 (25 bp)
TACCGGTTACAGTACCTATCAGCCA
NONE
Target Sequence 
GAAAACACCTATTAAACCAATCACAGCAATACCGGTTACAGTACCTATCAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32261.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis