Browse Element(s) Details


OsAffx.30475.3.S1_s_at

Description tigr:9632.m01506
TID=OsAffx.30475.3
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP synthase F1, alpha subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1674011/11ATP synthase alpha chain, putative, expressed
LOC_Os03g4847111/11ATP synthase alpha chain, putative
LOC_Os10g3827011/11ATP synthase alpha chain, putative, expressed
LOC_Os10g2124011/11ATP synthase alpha chain, putative
LOC_Os09g088805/11ATP synthase alpha chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16720OsAffx.32221.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720Os.26596.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32220.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32219.1.S1_x_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32241.1.S1_x_at10/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16730Os.46404.1.S1_x_at5/114+9089112..9089957Photosystem Q, putative
LOC_Os04g16740OsAffx.30475.3.S1_s_at11/114+9103443..9105093ATP synthase alpha chain, putative, expressed
LOC_Os04g16750OsAffx.32212.1.S1_x_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750Os.26751.2.S1_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_s_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_x_at6/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30475.3.S1_s_at--410--3035Chr10:10511030..10511054 (25 bp)
AATGCCGGAATTCGGCCTGCTATTA
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--1104--94Chr10:10511039..10511063 (25 bp)
ATTCGGCCTGCTATTAATGTGGGTA
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--731--9075Chr10:10511047..10511071 (25 bp)
TGCTATTAATGTGGGTATTTCCGTT
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--323--10077Chr10:10511079..10511103 (25 bp)
TAGGATCCGCGGCTCAAATTAAAGC
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--374--5535Chr10:10511107..10511131 (25 bp)
GAAACAAGTAGCTGGCAAATCAAAA
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--808--6757Chr10:10511155..10511179 (25 bp)
GTTACAAGCCTTTGCACAATTCGCC
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--413--4179Chr10:10511176..10511200 (25 bp)
CGCCTCTGCTCTCGATAAAACAAGT
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--125--7575Chr10:10511218..10511242 (25 bp)
GGGCCGACGATTACGAGAATTGCTT
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--611--10474Chr10:10511241..10511265 (25 bp)
TTAAACAATCCCAAGCAAATCCTCT
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--504--8196Chr10:10511272..10511296 (25 bp)
GGAAGAGCAGATAGCTACTATTTAT
LOC_Os10g21240
OsAffx.30475.3.S1_s_at--393--7937Chr10:10511309..10511333 (25 bp)
GGATATCTTGATTCCTTAGAAATTG
LOC_Os10g21240
Target Sequence 
AATGCCGGAATTCGGCCTGCTATTAATGTGGGTATTTCCGTTTCCAGAGTAGGATCCGCGGCTCAAATTAAAGCCATGAA
ACAAGTAGCTGGCAAATCAAAATTGGAATTAGCTCAATTCGCNGAGTTACAAGCCTTTGCACAATTCGCCTCTGCTCTCG
ATAAAACAAGTCAGAATCAATTGGCAAGGGGCCGACGATTACGAGAATTGCTTAAACAATCCCAAGCAAATCCTCTTCCA
GTGGAAGAGCAGATAGCTACTATTTATATCGGAACAAGAGGATATCTTGATTCCTTAGAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30475.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis