Browse Element(s) Details

Os.26751.1.S1_s_at

Description

gb:AK062299.1
DB_XREF= gi:32972317
TID=Os.26751.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) photosystem I P700 chlorophyll A apoprotein A1 (P0557A01.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-G11, full insert sequence.
FL= gb:AK062299.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38229	11/11	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760	9/11	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38189	Os.49755.1.S1_at	4/11	10	+	20119408..20120356	glutathione S-transferase GST 34, putative, expressed
LOC_Os10g38189	Os.36568.1.S1_x_at	1/11	10	+	20119408..20120356	glutathione S-transferase GST 34, putative, expressed
LOC_Os10g38210	OsAffx.26050.13.S1_x_at	5/11	10	+	20135104..20135529	NAD, putative
LOC_Os10g38229	Os.26751.1.S1_s_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38229	OsAffx.32214.1.S1_x_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_x_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_s_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	Os.26751.2.S1_at	7/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38270	OsAffx.30475.3.S1_s_at	11/11	10	+	20148368..20149879	ATP synthase alpha chain, putative, expressed
LOC_Os10g38292	OsAffx.22955.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.22955.2.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32209.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.26770.2.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32208.1.S1_x_at	10/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_x_at	6/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314	NA	NA	10	+	20155218..20156398	Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340	Os.9013.1.S1_at	11/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340	Os.46634.1.S1_x_at	1/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350	Os.46635.1.S1_x_at	11/11	10	+	20163648..20164516	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360	Os.13015.1.S1_at	10/11	10	+	20168320..20169412	Glutathione S-transferase, N-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009768	biological_process	photosynthesis, light harvesting in photosystem I
GO:0009769	biological_process	photosynthesis, light harvesting in photosystem II
GO:0015979	biological_process	photosynthesis
GO:0009507	cellular_component	chloroplast
GO:0009535	cellular_component	thylakoid membrane (sensu Viridiplantae)
GO:0009538	cellular_component	photosystem I reaction center
GO:0009539	cellular_component	photosystem II reaction center
GO:0016168	molecular_function	chlorophyll binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26751.1.S1_s_at--145--979	5	Chr10:20145124..20145148 (25 bp)	TAAGATTTCCCAGGTTTAGCCAAGG	LOC_Os10g38229
Os.26751.1.S1_s_at--1100--1045	5	Chr10:20145139..20145163 (25 bp)	TTAGCCAAGGCTTAGCTCAGGACCC	LOC_Os10g38229
Os.26751.1.S1_s_at--605--331	5	Chr10:20145164..20145188 (25 bp)	CACTACTCGTCGTATTTGGTTTGGT	LOC_Os10g38229
Os.26751.1.S1_s_at--322--1085	5	Chr10:20145179..20145203 (25 bp)	TTGGTTTGGTATTGCTACCGCACAT	LOC_Os10g38229
Os.26751.1.S1_s_at--314--485	5	Chr10:20145192..20145216 (25 bp)	GCTACCGCACATGATTTCGAAAGTC	LOC_Os10g38229
Os.26751.1.S1_s_at--918--617	5	Chr10:20145231..20145255 (25 bp)	GAGGAACGTCTTTATCAGAACATTT	LOC_Os10g38229
Os.26751.1.S1_s_at--425--491	5	Chr10:20145258..20145282 (25 bp)	GCTTCTCACTTTGGGCAATTAGCAA	LOC_Os10g38229
Os.26751.1.S1_s_at--1126--307	5	Chr10:20145281..20145305 (25 bp)	AATAATCTTTCTATGGACGTCCGGA	LOC_Os10g38229
Os.26751.1.S1_s_at--1099--927	5	Chr10:20145300..20145324 (25 bp)	TCCGGAAATCTGTTTCATGTCGCTT	LOC_Os10g38229
Os.26751.1.S1_s_at--176--31	5	Chr10:20145348..20145372 (25 bp)	ATACAGGATCCTTTACACGTAAGAC	LOC_Os10g38229
Os.26751.1.S1_s_at--162--1025	5	Chr10:20145388..20145412 (25 bp)	TTTGGGATCCTCATTTTGGTCAACC	LOC_Os10g38229

Target Sequence

TAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACAT
GATTTCGAAAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAAT
AATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTCGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTAC
ACGTAAGACCTATNGNTCATGCGATTTGGGATCCTCATTTTGGTCAACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis