Browse Element(s) Details

Os.13015.1.S1_at

Description

gb:AF402799.1
DB_XREF= gi:15430720
TID=Os.13015.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13015 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone RICS11381A putative glutathione S-transferase OsGSTU12 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTU12
FL= gb:AF402799.1 gb:AK063773.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38360	10/11	Glutathione S-transferase, N-terminal domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38229	Os.26751.1.S1_s_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38229	OsAffx.32214.1.S1_x_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_x_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_s_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	Os.26751.2.S1_at	7/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38270	OsAffx.30475.3.S1_s_at	11/11	10	+	20148368..20149879	ATP synthase alpha chain, putative, expressed
LOC_Os10g38292	OsAffx.22955.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.22955.2.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32209.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.26770.2.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32208.1.S1_x_at	10/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_x_at	6/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314	NA	NA	10	+	20155218..20156398	Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340	Os.9013.1.S1_at	11/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340	Os.46634.1.S1_x_at	1/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350	Os.46635.1.S1_x_at	11/11	10	+	20163648..20164516	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360	Os.13015.1.S1_at	10/11	10	+	20168320..20169412	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38370	OsAffx.22848.4.S1_at	11/11	10	+	20173318..20179339	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38370	OsAffx.22848.4.S1_x_at	11/11	10	+	20173318..20179339	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38386	NA	NA	10	+	20182358..20182789	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38402	NA	NA	10	+	20185594..20192256	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009407	biological_process	toxin catabolism
GO:0005737	cellular_component	cytoplasm
GO:0004364	molecular_function	glutathione transferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.13015.1.S1_at--1105--363	1	Chr10:20168706..20168730 (25 bp)	CTTCTGGGCCGCATTCTGCGACGAC	LOC_Os10g38360
Os.13015.1.S1_at--287--865	1	Chr10:20168710..20168733 (24 bp)	TGGGCCGCATTCTGCGACGACACGA	LOC_Os10g38360
Os.13015.1.S1_at--188--757	1	NONE	GGGCCGCATTCTGCGACGACACGAT	NONE
Os.13015.1.S1_at--822--359	1	Chr10:20168717..20168847 (25 bp)	CATTCTGCGACGACACGATCGCGAA	LOC_Os10g38360
Os.13015.1.S1_at--85--341	1	Chr10:20168855..20168879 (25 bp)	CAGCAGGCGTCGTCGGGAAAGACGG	LOC_Os10g38360
Os.13015.1.S1_at--429--281	1	Chr10:20169214..20169238 (25 bp)	AAGATACACCAGTTCTCTTCTAGTT	LOC_Os10g38360
Os.13015.1.S1_at--1162--125	1	Chr10:20169215..20169239 (25 bp)	AGATACACCAGTTCTCTTCTAGTTC	LOC_Os10g38360
Os.13015.1.S1_at--450--647	1	Chr10:20169216..20169240 (25 bp)	GATACACCAGTTCTCTTCTAGTTCT	LOC_Os10g38360
Os.13015.1.S1_at--701--33	1	Chr10:20169217..20169241 (25 bp)	ATACACCAGTTCTCTTCTAGTTCTA	LOC_Os10g38360
Os.13015.1.S1_at--205--987	1	Chr10:20169218..20169242 (25 bp)	TACACCAGTTCTCTTCTAGTTCTAG	LOC_Os10g38360
Os.13015.1.S1_at--378--367	1	Chr10:20169353..20169377 (25 bp)	CTTTTGTTCTTATATTTCTATCAAA	LOC_Os10g38360

Target Sequence

CTTCTGGGCCGCATTCTGCGACGACACGATCGCGAAGGCGTCGCAGCAGGCGTCGTCGGGAAAGACGGAGGAGGAGAAGG
CGGAAGGGGAGAAGAAGGTGGTGGAGGCGCTGGAGAAGATGGAGGTCGGGCTGAGCGAGTGCTCCAAGGGGAAGCCCTTC
TTCGGTGGCGACACCGTCGGCTACGTCGACATCGTGCTCGGCAGCTTCCTGGCGTGGGTTCGCGCCGGCGACGCGATGAA
GGGCGTCAAGAGGTTCGACCCGGCCACCACCCCGCTGCTGGCGGCGTGGGCCGAGCGCTTCGTCGAGCTGGACGTCGCCA
AGGCCGCCATGCCGGAGGTGGACAAGCTGATCGAGCTCGCCATGGCGAGGATGGCTGGCGCCGCTGCTGCTGCCACCAAC
TGAAGATACACCAGTTCTCTTCTAGTTCTAGTTCTGTTTAAGGTGTTATTTTCTTCGATGAAAATAAATGTTGAATGAAG
GGGTGGGTCAGTGTGTGTGAGTATGGGAGATCTTTCACAACTTAAGAAGCACATGTATGCCCTTTTGTTCTTATATTTCT
ATCAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis