Browse Element(s) Details


Os.46208.1.S1_s_at

Description gb:CB635070
DB_XREF= gi:29630061
DB_XREF=OSIIEb15A23.f
CLONE=OSIIEb15A23
TID=Os.46208.1
CNT=16
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ATPase a subunit (OSJNBa0034L04.41), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3829211/11Chloroplast ATP synthase a chain precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38210OsAffx.26050.13.S1_x_at5/1110+20135104..20135529NAD, putative
LOC_Os10g38229Os.26751.1.S1_s_at11/1110+20142839..20145429Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38229OsAffx.32214.1.S1_x_at11/1110+20142839..20145429Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38248OsAffx.32213.1.S1_x_at11/1110+20146442..20147547Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248OsAffx.32213.1.S1_s_at11/1110+20146442..20147547Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248Os.26751.2.S1_at7/1110+20146442..20147547Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38270OsAffx.30475.3.S1_s_at11/1110+20148368..20149879ATP synthase alpha chain, putative, expressed
LOC_Os10g38292OsAffx.22955.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46208.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46135.1.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.22955.2.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.32209.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.26770.2.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46208.1.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.32208.1.S1_x_at10/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46135.1.S1_x_at6/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314NANA10+20155218..20156398Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340Os.9013.1.S1_at11/1110+20158943..20160193glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340Os.46634.1.S1_x_at1/1110+20158943..20160193glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350Os.46635.1.S1_x_at11/1110+20163648..20164516glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360Os.13015.1.S1_at10/1110+20168320..20169412Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38370OsAffx.22848.4.S1_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38370OsAffx.22848.4.S1_x_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46208.1.S1_s_at--36--9272Chr10:10507348..10507372 (25 bp)
TCCGATATATGGAATCGGATTCCAT
NONE
Os.46208.1.S1_s_at--56--9751Chr10:20152382..20152406 (25 bp)
TAATTCCTATTGGATCTGGATTAGG
LOC_Os10g38292
Os.46208.1.S1_s_at--376--3691Chr10:20152376..20152400 (25 bp)
CTATTGGATCTGGATTAGGTCGATT
LOC_Os10g38292
Os.46208.1.S1_s_at--491--31Chr10:20152374..20152398 (25 bp)
ATTGGATCTGGATTAGGTCGATTTC
LOC_Os10g38292
Os.46208.1.S1_s_at--968--8551Chr10:20152372..20152396 (25 bp)
TGGATCTGGATTAGGTCGATTTCCA
LOC_Os10g38292
Os.46208.1.S1_s_at--570--6732Chr10:10507458..10507482 (25 bp)
GTTCTTCCTCTATTTCACCTTTTAT
NONE
Os.46208.1.S1_s_at--1151--10552Chr10:10507459..10507483 (25 bp)
TTCTTCCTCTATTTCACCTTTTATT
NONE
Os.46208.1.S1_s_at--785--9572Chr10:10507460..10507484 (25 bp)
TCTTCCTCTATTTCACCTTTTATTA
NONE
Os.46208.1.S1_s_at--1053--10652Chr10:10507462..10507486 (25 bp)
TTCCTCTATTTCACCTTTTATTATG
NONE
Os.46208.1.S1_s_at--847--4293Chr10:10507464..10507488 (25 bp)
CCTCTATTTCACCTTTTATTATGAA
NONE
Os.46208.1.S1_s_at--955--3352Chr10:10507473..10507497 (25 bp)
CACCTTTTATTATGAATTAGATGAT
NONE
Target Sequence 
TCCGATATATGGAATCGGATTCCATATCCAATTCGATGCAGCATATTGTTATCAATTGGATATCTTGATTNTAATTCCTA
TTGGATCTGGATTAGGTCGATTTCCATAGGGGTTCTTCCTCTATTTCACCTTTTATTATGAATTAGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46208.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis