Browse Element(s) Details


OsAffx.15227.3.S1_at

Description tigr:9633.m03283
TID=OsAffx.15227.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3530011/11hypothetical protein
LOC_Os11g287402/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35240Os.53577.1.S1_at11/115+20853038..20853878expressed protein
LOC_Os05g35250OsAffx.4524.1.S1_at11/115+20855445..20855856hypothetical protein
LOC_Os05g35260Os.49517.1.S1_at11/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35260OsAffx.12617.1.S1_at3/115+20856377..20859033PB1 domain containing protein, expressed
LOC_Os05g35274Os.49586.1.S1_a_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.49586.1.S2_at11/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274Os.12539.1.S1_at9/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35274OsAffx.11744.1.S1_x_at1/115+20861634..20868183Galactosyltransferase family protein, expressed
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein
LOC_Os05g35320OsAffx.30475.5.S1_x_at9/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35320OsAffx.30475.1.S1_s_at2/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35330OsAffx.26050.37.S1_s_at11/115+20890698..20891144Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os05g35340OsAffx.27176.1.S1_s_at11/115+20895356..20896726expressed protein
LOC_Os05g35340Os.7559.1.S1_at11/115+20895356..20896726expressed protein
LOC_Os05g35350OsAffx.4525.1.S1_at11/115+20902626..20903091hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15227.3.S1_at--635--4471Chr05:20879863..20879887 (25 bp)
GCCTGCTTGTGTTGCGGCGGCCAAA
LOC_Os05g35300
OsAffx.15227.3.S1_at--1132--1391Chr05:20879792..20879816 (25 bp)
AGAAGGATTGAAACAGGACTGGCAT
LOC_Os05g35300
OsAffx.15227.3.S1_at--681--791Chr05:20879774..20879793 (20 bp)
ATGTGGGCCCCTTATGTCGGGCAAC
LOC_Os05g35300
OsAffx.15227.3.S1_at--914--8691Chr05:20878745..20878765 (21 bp)
TGTCGGGCAACTACAACTCCAACAA
LOC_Os05g35300
OsAffx.15227.3.S1_at--115--9331Chr05:20878625..20878649 (25 bp)
TCGCCAAGACCTTGCCGAAGCTCAT
LOC_Os05g35300
OsAffx.15227.3.S1_at--955--1071Chr05:20878592..20878616 (25 bp)
AGGGCAACCAGACGCAGTCCACGAG
LOC_Os05g35300
OsAffx.15227.3.S1_at--440--9951Chr05:20878369..20878545 (25 bp)
TACCCCGGCGAGCTTTGTATTTGTT
LOC_Os05g35300
OsAffx.15227.3.S1_at--1125--8371Chr05:20878363..20878383 (21 bp)
GGCGAGCTTTGTATTTGTTTCTCTG
LOC_Os05g35300
OsAffx.15227.3.S1_at--1159--9311Chr05:20878314..20878338 (25 bp)
TCGCCGCCCTATTCAAAGGCCTAAA
LOC_Os05g35300
OsAffx.15227.3.S1_at--704--832Chr11:16139936..16139960 (25 bp)
AGGCCTAAACAACATTGGTGAGCTC
LOC_Os11g28740
OsAffx.15227.3.S1_at--825--7753Chr11:16139952..16139971 (20 bp)
GGTGAGCTCTCTATTAAGCTCTTTG
LOC_Os11g28740
Target Sequence 
GCCTGCTTGTGTTGCGGCGGCCAAAGGGGAAGAAGGAGGAGAGAAAGAGAGAAGGGAGAGAGGGAGGAGGAAGAAGGATT
GAAACAGGACTGGCATGTGGGCCCCTTATGTCGGGCAACTACAACTCCAACAACGTCGCTGCCCTCGACGTCGGTAGCGA
GTACGGCTTCGACACCAGCTACTACGCCAACCGCACCGTACGTGCTCGAGTCCGACGCCACGCTCCACTCGCCAAGACCT
TGCCGAAGCTCATCCAGCTCAAGGGCAACCAGACGCAGTCCACGAGCAGCTTCGCCAACGCCATGGTCAAGATGGGCAAC
CTCCGCGGCGGCTACCCCGGCGAGCTTTGTATTTGTTTCTCTGCATTTTACCTCATCGCCACCCCAGTCGCCGCCCTATT
CAAAGGCCTAAACAACATTGGTGAGCTCTCTATTAAGCTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15227.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis