Browse Element(s) Details


Os.7559.1.S1_at

Description gb:AK067448.1
DB_XREF= gi:32977466
TID=Os.7559.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107N09, full insert sequence.
FL= gb:AK067448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3534011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein
LOC_Os05g35320OsAffx.30475.5.S1_x_at9/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35320OsAffx.30475.1.S1_s_at2/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35330OsAffx.26050.37.S1_s_at11/115+20890698..20891144Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os05g35340OsAffx.27176.1.S1_s_at11/115+20895356..20896726expressed protein
LOC_Os05g35340Os.7559.1.S1_at11/115+20895356..20896726expressed protein
LOC_Os05g35350OsAffx.4525.1.S1_at11/115+20902626..20903091hypothetical protein
LOC_Os05g35360OsAffx.4526.1.S1_at11/115+20906344..20915118Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g35370OsAffx.14973.1.S1_at10/115+20915376..20918109hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7559.1.S1_at--365--1371Chr05:20895560..20895584 (25 bp)
AGAGCCTGTCCGTGATCGAATTACC
LOC_Os05g35340
Os.7559.1.S1_at--497--4471Chr05:20895557..20895581 (25 bp)
GCCTGTCCGTGATCGAATTACCACA
LOC_Os05g35340
Os.7559.1.S1_at--1072--9511Chr05:20895491..20895515 (25 bp)
TCTACTCGTGTAGAAAATTTTGGTT
LOC_Os05g35340
Os.7559.1.S1_at--399--3591Chr05:20895465..20895489 (25 bp)
CATTTTTTGGTGTTGATATACTAGC
LOC_Os05g35340
Os.7559.1.S1_at--264--6651Chr05:20895454..20895478 (25 bp)
GTTGATATACTAGCGATGGATCGAT
LOC_Os05g35340
Os.7559.1.S1_at--436--9391Chr05:20895426..20895450 (25 bp)
TCGATCACCCTGCAGGTGAGTACAT
LOC_Os05g35340
Os.7559.1.S1_at--451--1811Chr05:20895420..20895444 (25 bp)
ACCCTGCAGGTGAGTACATAAAGAT
LOC_Os05g35340
Os.7559.1.S1_at--1148--6071Chr05:20895394..20895418 (25 bp)
GAGTATGAGATCTGAGCGACCGTTT
LOC_Os05g35340
Os.7559.1.S1_at--506--1271Chr05:20895387..20895411 (25 bp)
AGATCTGAGCGACCGTTTTGACGCA
LOC_Os05g35340
Os.7559.1.S1_at--777--8891Chr05:20895382..20895406 (25 bp)
TGAGCGACCGTTTTGACGCATATAC
LOC_Os05g35340
Os.7559.1.S1_at--1037--4012Chr04:10403372..10403521 (24 bp)
CGTTTTGACGCATATACGTATATAA
NONE
Target Sequence 
AGAGCCTGTCCGTGATCGAATTACCACACGNATAGTAGTANACATTTTTACAAGTTTTTTTTTTTTGTTTCTACTCGTGT
AGAAAATTTTGGTTTCATTTTTTGGTGTTGATATACTAGCGATGGATCGATCGATCGATCACCCTGCAGGTGAGTACATA
AAGATCGAGTATGAGATCTGAGCGACCGTTTTGACGCATATACGTATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis