Browse Element(s) Details


OsAffx.14970.1.S1_at

Description tigr:9633.m03273
TID=OsAffx.14970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3521011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35180NANA5+20803162..20808375retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35190Os.23679.1.A1_s_at11/115+20810915..20814702expressed protein
LOC_Os05g35190Os.53910.1.S1_at11/115+20810915..20814702expressed protein
LOC_Os05g35200Os.11691.1.S1_at11/115+20815122..20820452secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os05g35210OsAffx.14970.1.S1_at11/115+20830729..20831139hypothetical protein
LOC_Os05g35220OsAffx.4523.1.S1_at10/115+20846331..20847449hypothetical protein
LOC_Os05g35230OsAffx.27173.1.S1_at11/115+20847928..20850838expressed protein
LOC_Os05g35240Os.53577.1.S1_at11/115+20853038..20853878expressed protein
LOC_Os05g35250OsAffx.4524.1.S1_at11/115+20855445..20855856hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14970.1.S1_at--708--9131Chr05:20831085..20831108 (24 bp)
TGCTGGCTGGCTTATTAGCTGGCGC
LOC_Os05g35210
OsAffx.14970.1.S1_at--466--8351Chr05:20831085..20831104 (20 bp)
GGCTGGCTTATTAGCTGGCGCGTAT
LOC_Os05g35210
OsAffx.14970.1.S1_at--951--8291Chr05:20830836..20831100 (25 bp)
GGCTTATTAGCTGGCGCGTATCAGA
LOC_Os05g35210
OsAffx.14970.1.S1_at--729--10451Chr05:20830830..20831094 (25 bp)
TTAGCTGGCGCGTATCAGAATTATA
LOC_Os05g35210
OsAffx.14970.1.S1_at--1134--8391Chr05:20830824..20830845 (22 bp)
GGCGCGTATCAGAATTATAATGACT
LOC_Os05g35210
OsAffx.14970.1.S1_at--237--10171Chr05:20830809..20830833 (25 bp)
TATAATGACTTTCGGTCGAACGCCG
LOC_Os05g35210
OsAffx.14970.1.S1_at--951--7791Chr05:20830796..20830820 (25 bp)
GGTCGAACGCCGTCGATAGCCGCTT
LOC_Os05g35210
OsAffx.14970.1.S1_at--1008--4911Chr05:20830775..20830799 (25 bp)
GCTTCCTCTCGCATATGCTAAGTCG
LOC_Os05g35210
OsAffx.14970.1.S1_at--340--9511Chr05:20830769..20830793 (25 bp)
TCTCGCATATGCTAAGTCGTTATAC
LOC_Os05g35210
OsAffx.14970.1.S1_at--593--4951Chr05:20830765..20830789 (25 bp)
GCATATGCTAAGTCGTTATACGGTT
LOC_Os05g35210
OsAffx.14970.1.S1_at--979--591Chr05:20830761..20830785 (25 bp)
ATGCTAAGTCGTTATACGGTTATAA
LOC_Os05g35210
Target Sequence 
TGCTGGCTGGCTTATTAGCTGGCGCGTATCAGAATTATAATGACTTTCGGTCGAACGCCGTCGATAGCCGCTTCCTCTCG
CATATGCTAAGTCGTTATACGGTTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis