Browse Element(s) Details


Os.11691.1.S1_at

Description gb:AK064877.1
DB_XREF= gi:32974895
TID=Os.11691.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11691 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000J17, full insert sequence.
FL= gb:AK061637.1 gb:AK064877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3520011/11secondary cell wall-related glycosyltransferase family 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35140Os.10031.1.S1_at11/115+20786939..20790582MtN3/saliva family protein, expressed
LOC_Os05g35150OsAffx.22438.1.S1_x_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35150OsAffx.22438.1.S1_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35160OsAffx.17964.1.S1_x_at11/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_x_at2/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_at1/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35170Os.12020.1.S1_at11/115+20797137..20801255No apical meristem protein, expressed
LOC_Os05g35180NANA5+20803162..20808375retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35190Os.23679.1.A1_s_at11/115+20810915..20814702expressed protein
LOC_Os05g35190Os.53910.1.S1_at11/115+20810915..20814702expressed protein
LOC_Os05g35200Os.11691.1.S1_at11/115+20815122..20820452secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os05g35210OsAffx.14970.1.S1_at11/115+20830729..20831139hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11691.1.S1_at--1069--3091Chr05:20815667..20815691 (25 bp)
AATATGCCCGAGAAGCTTCAGTCCT
LOC_Os05g35200
Os.11691.1.S1_at--203--2711Chr05:20815655..20815679 (25 bp)
AAGCTTCAGTCCTATTGCTTGCTGA
LOC_Os05g35200
Os.11691.1.S1_at--3--6371Chr05:20815541..20815565 (25 bp)
GATCCAAGACTGACTATCTGCTACG
LOC_Os05g35200
Os.11691.1.S1_at--395--471Chr05:20815526..20815550 (25 bp)
ATCTGCTACGAGAAGTTCTGCTACT
LOC_Os05g35200
Os.11691.1.S1_at--264--9491Chr05:20815510..20815534 (25 bp)
TCTGCTACTGGGAGAGCATGCTGCT
LOC_Os05g35200
Os.11691.1.S1_at--926--2611Chr05:20815454..20815478 (25 bp)
AACCCTGTGCCAGCGACAATATCAA
LOC_Os05g35200
Os.11691.1.S1_at--164--2411Chr05:20815354..20815378 (25 bp)
AAACAGCTTGTGTAGGTTGCCATGC
LOC_Os05g35200
Os.11691.1.S1_at--770--631Chr05:20815333..20815357 (25 bp)
ATGCTTAGGCCTTTCCAACACACAA
LOC_Os05g35200
Os.11691.1.S1_at--1082--2411Chr05:20815301..20815325 (25 bp)
AAAAAACACCCTCCATTGCTGTCAT
LOC_Os05g35200
Os.11691.1.S1_at--1046--1611Chr05:20815270..20815294 (25 bp)
AGCTGTGTCTCGCTGCGTTGTTGAC
LOC_Os05g35200
Os.11691.1.S1_at--175--6351Chr05:20815158..20815182 (25 bp)
GATGCTGCACAGAGAGGCTGTCCTT
LOC_Os05g35200
Target Sequence 
AATATGCCCGAGAAGCTTCAGTCCTATTGCTTGCTGAGATCAAAGCTGAAGGCTGGGCTGGAATGGGAACGGAGGCAGGC
TGAGAAGGCAAACCTGGAAGATGGACATTGGCGGCGAAATATCACCNGATCCAAGACTGACTATCTGCTACGAGAAGTTC
TGCTACTGGGAGAGCATGCTGCTGCATTGGGGTGAGAAGAACCCNACGAACAACAACCCTGTGCCAGCGACAATATCAAG
CTCATGATCTGTAGATAGCTCAAGATATTATTAGTACACAAAAATCCATCCTATATAGCACTATACATGCATAGAAACAG
CTTGTGTAGGTTGCCATGCTTAGGCCTTTCCAACACACAAAANAAAAAAAAAACACCCTCCATTGCTGTCATGGCTGCAG
CTGTGTCTCGCTGCGTTGTTGACNGCTAACAATTCTTTCGGGTTGGTTTAGCTAATNAGTTATGGCAAATGTAAATTCCT
TGATGAAAAACCTGAGTACTGCGGGNAAAGAGATGCTGCACAGAGAGGCTGTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis