Browse Element(s) Details


OsAffx.17964.1.S1_x_at

Description tigr:9633.m03267
TID=OsAffx.17964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ENTH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3516011/11ANTH domain containing protein, expressed
LOC_Os06g377801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35120Os.26886.2.S1_s_at9/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.6.S1_s_at8/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.16467.1.S1_at7/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120Os.26886.3.S1_x_at6/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35120OsAffx.3425.1.S1_at1/115+20775462..20782621transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35130OsAffx.4520.1.S1_at11/115+20784374..20784898hypothetical protein
LOC_Os05g35140Os.10031.1.S1_at11/115+20786939..20790582MtN3/saliva family protein, expressed
LOC_Os05g35150OsAffx.22438.1.S1_x_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35150OsAffx.22438.1.S1_at4/115+20793418..20793885hypothetical protein
LOC_Os05g35160OsAffx.17964.1.S1_x_at11/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_x_at2/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35160OsAffx.17964.2.S1_at1/115+20794792..20796685ANTH domain containing protein, expressed
LOC_Os05g35170Os.12020.1.S1_at11/115+20797137..20801255No apical meristem protein, expressed
LOC_Os05g35180NANA5+20803162..20808375retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g35190Os.23679.1.A1_s_at11/115+20810915..20814702expressed protein
LOC_Os05g35190Os.53910.1.S1_at11/115+20810915..20814702expressed protein
LOC_Os05g35200Os.11691.1.S1_at11/115+20815122..20820452secondary cell wall-related glycosyltransferase family 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17964.1.S1_x_at--487--8471Chr05:20796135..20796159 (25 bp)
TGGCGCTCGCCCTGTTCGACGGTAA
LOC_Os05g35160
OsAffx.17964.1.S1_x_at--852--5811Chr05:20796194..20796218 (25 bp)
GACCCCTCGTCGACGGACTGGGAGA
LOC_Os05g35160
OsAffx.17964.1.S1_x_at--536--8631Chr05:20796212..20796236 (25 bp)
TGGGAGACGGCGCTGGTCCAGTCCG
LOC_Os05g35160
OsAffx.17964.1.S1_x_at--952--612Chr06:22361495..22361519 (25 bp)
ATGCTGGTGCTCGACGGGATGTACA
LOC_Os06g37780
OsAffx.17964.1.S1_x_at--484--9371Chr05:20796294..20796318 (25 bp)
TCGACGGGATGTACAGCCAAGCGGC
LOC_Os05g35160
OsAffx.17964.1.S1_x_at--262--2611Chr05:20796338..20796362 (25 bp)
AACGCGCAGGCGTTCTCCGGCAGCG
LOC_Os05g35160
OsAffx.17964.1.S1_x_at--778--4151Chr05:20796471..20796495 (25 bp)
CGCCGCCGGCGTACGTGCAGATGTC
LOC_Os05g35160
OsAffx.17964.1.S1_x_at--321--3431Chr05:20796488..20796512 (25 bp)
CAGATGTCGGACATGGAGACGAAGC
LOC_Os05g35160
OsAffx.17964.1.S1_x_at--531--1391Chr05:20796504..20796528 (25 bp)
AGACGAAGCAGCATCAGCTGGTGGA
LOC_Os05g35160
OsAffx.17964.1.S1_x_at--249--5031Chr05:20796547..20796571 (25 bp)
GCAGTACGGCAAGAACGGCATGAGT
LOC_Os05g35160
OsAffx.17964.1.S1_x_at--212--9051Chr05:20796624..20796648 (25 bp)
TGCAGATGCAGATGCTGCCCAATGG
LOC_Os05g35160
Target Sequence 
TGGCGCTCGCCCTGTTCGACGGTAACCCGGCCGGGTCGGCGCCGGCGCCCGACGCGTTCGACCCCTCGTCGACGGACTGG
GAGACGGCGCTGGTCCAGTCCGCGAGCGCGCTCGCCCACCAGCGCGCCGAGCTCGGCGGCGGCCTCAGCATGCTGGTGCT
CGACGGGATGTACAGCCAAGCGGCGGCGGCGTCGACGGCCGCGAACGCGCAGGCGTTCTCCGGCAGCGCGAGCAGCGTGG
CGATGCGGCCGCCGGGGGCGCCGATGCTCGCGCTGCCCGCGCCACCCGGGACCAGCGGCGCCAGCGGCGACCCCTTCGCG
GCGTCCATGGCGGTGGCGCCGCCGGCGTACGTGCAGATGTCGGACATGGAGACGAAGCAGCATCAGCTGGTGGAGGAGCA
GATGGTGTGGCAGCAGTACGGCAAGAACGGCATGAGTGGGCAGGGCGCGCTCGCCATGCTCGAGCAGCAGCGGCCACCGC
AGCAGCAGATGCAGATGCAGATGCTGCCCAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17964.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis