Browse Element(s) Details


Os.26509.1.S1_x_at

Description gb:AK062797.1
DB_XREF= gi:32972815
TID=Os.26509.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=24
UG=Os.26509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) chloroplast ORF185 (OSJNBa0042P21.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C09, full insert sequence.
FL= gb:AK062797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3973011/11Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39680Os.50203.1.S1_at11/116+23555510..23558218transposon protein, putative, unclassified, expressed
LOC_Os06g39690Os.11654.1.S1_at11/116+23558711..23562074SOUL heme-binding protein, expressed
LOC_Os06g39700Os.26455.2.S1_s_at11/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700OsAffx.32333.1.S1_x_at11/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700OsAffx.32331.1.S1_x_at10/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700OsAffx.32332.1.S1_x_at7/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700OsAffx.32334.1.S1_x_at5/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39710Os.26592.1.S1_s_at11/116+23571438..23572856Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710Os.26592.3.S1_x_at7/116+23571438..23572856Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710Os.26592.2.A1_s_at7/116+23571438..23572856Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710Os.26592.2.A1_x_at3/116+23571438..23572856Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39720OsAffx.32314.1.S1_at7/116+23573779..23574126ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os06g39720Os.48031.1.S1_x_at6/116+23573779..23574126ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os06g39730OsAffx.32233.1.S1_x_at11/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.32259.1.S1_x_at11/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.26050.2.S2_x_at11/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.32256.1.S1_x_at11/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.32255.1.S1_x_at11/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730Os.26509.1.S1_x_at11/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.26050.37.S1_s_at10/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.32258.1.S1_x_at10/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730Os.26509.1.S1_s_at10/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.32234.1.S1_x_at10/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730Os.29056.1.S1_s_at9/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.32257.1.S1_x_at8/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730Os.47372.1.S1_x_at7/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730Os.47372.1.S1_at7/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.32260.1.S1_at6/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730OsAffx.32200.1.S1_x_at2/116+23581195..23587647Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39740OsAffx.30475.9.S1_s_at10/116+23588446..23590352ATP synthase beta chain, putative
LOC_Os06g39740OsAffx.30475.5.S1_x_at9/116+23588446..23590352ATP synthase beta chain, putative
LOC_Os06g39740OsAffx.30475.1.S1_s_at9/116+23588446..23590352ATP synthase beta chain, putative
LOC_Os06g39750Os.9286.1.S1_at11/116+23607741..23610099Fatty acid elongase, putative, expressed
LOC_Os06g39750Os.9286.1.S1_s_at11/116+23607741..23610099Fatty acid elongase, putative, expressed
LOC_Os06g39760Os.15810.2.S1_x_at11/116+23612191..23620156Serine-threonine kinase receptor-associated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0009507cellular_componentchloroplast
GO:0009512cellular_componentcytochrome b6f complex
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.26509.1.S1_x_at--799--3596Chr10:10533878..10533902 (25 bp)
CATTCCCTTGACTCGTACTGATGAG
NONE
Os.26509.1.S1_x_at--966--3175Chr10:10533943..10533967 (25 bp)
AATTGGCTTATTTCTTGCGCATACC
NONE
Os.26509.1.S1_x_at--537--2317Chr12:5634631..5634655 (25 bp)
AAAGGTCCCTTCGAAATTGCATTAT
NONE
Os.26509.1.S1_x_at--398--10216Chr12:5634750..5634774 (25 bp)
TATTCTTCCATTTTCATCCGAAAGG
NONE
Os.26509.1.S1_x_at--29--10335Chr10:10534207..10534231 (25 bp)
TTTCTATTTCTCTATTCCACTCCAT
NONE
Os.26509.1.S1_x_at--276--5596Chr12:5634913..5634937 (25 bp)
GAAATATCATATAGAGTCAGCGAAT
NONE
Os.26509.1.S1_x_at--831--10176Chr12:5634922..5634946 (25 bp)
TATAGAGTCAGCGAATAAAGCGGAT
NONE
Os.26509.1.S1_x_at--32--6096Chr12:5634926..5634950 (25 bp)
GAGTCAGCGAATAAAGCGGATTCAT
NONE
Os.26509.1.S1_x_at--933--2315Chr12:5634938..5634962 (25 bp)
AAAGCGGATTCATTAACAACTCAAT
NONE
Os.26509.1.S1_x_at--368--1635Chr12:5634940..5634964 (25 bp)
AGCGGATTCATTAACAACTCAATTT
NONE
Os.26509.1.S1_x_at--809--9515Chr12:5634947..5634971 (25 bp)
TCATTAACAACTCAATTTACAGATC
NONE
Target Sequence
CATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTNGCCGAATTGGCTTATTTC
TTGCGCATACCAATGGAAGTATTTTGAGTACCANATTGAATTTTTTGAAATGAATTGAATGAAGAAGAATTGGAAGAAGA
AAAGTTTTCTCAACACGAGGGAAAAGGTCCCTTCGAAATTGCATTATTGTAAGGGGATTTTGAGTATTTATCTAAAGGAA
GGAACAAATNGAGGATAAGAGAAAATTNNGCNNTTCTAATTTGTCCNAGTGGGATATATGGCGTAATATTCTTCCATTTT
CATCCGAAAGGACTTTTTTCTATTTCTCTATTCCACTCCATCTAGATCTAAGAAAGAACTCAATGCAATGAAATTCTACT
AGTATAGAAAAAAGAGGAATAGATACAAGGTCTCAAACCTTGTTATAGAATTTTTCCTTCAAAGAAAAAGAAATATCATA
TAGAGTCAGCGAATAAAGCGGATTCATTAACAACTCAATTTACAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26509.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis