Browse Element(s) Details

Os.50203.1.S1_at

Description

gb:AK120083.1
DB_XREF= gi:37989706
TID=Os.50203.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013014J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013014J20, full insert sequence.
FL= gb:AK120083.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39680	11/11	transposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39640	Os.9351.1.S1_at	7/11	6	+	23539785..23545931	PINHEAD protein, putative, expressed
LOC_Os06g39650	NA	NA	6	+	23547032..23548624	pentatricopeptide, putative, expressed
LOC_Os06g39660	Os.50343.1.S1_at	11/11	6	+	23548716..23551685	FAD binding domain containing protein, expressed
LOC_Os06g39670	NA	NA	6	+	23553116..23553877	hypothetical protein
LOC_Os06g39680	Os.50203.1.S1_at	11/11	6	+	23555510..23558218	transposon protein, putative, unclassified, expressed
LOC_Os06g39690	Os.11654.1.S1_at	11/11	6	+	23558711..23562074	SOUL heme-binding protein, expressed
LOC_Os06g39700	Os.26455.2.S1_s_at	11/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32333.1.S1_x_at	11/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32331.1.S1_x_at	10/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32332.1.S1_x_at	7/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32334.1.S1_x_at	5/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39710	Os.26592.1.S1_s_at	11/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710	Os.26592.3.S1_x_at	7/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710	Os.26592.2.A1_s_at	7/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710	Os.26592.2.A1_x_at	3/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39720	OsAffx.32314.1.S1_at	7/11	6	+	23573779..23574126	ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os06g39720	Os.48031.1.S1_x_at	6/11	6	+	23573779..23574126	ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os06g39730	OsAffx.32233.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32259.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.26050.2.S2_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32256.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32255.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.26509.1.S1_x_at	11/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.26050.37.S1_s_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32258.1.S1_x_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.26509.1.S1_s_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32234.1.S1_x_at	10/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.29056.1.S1_s_at	9/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32257.1.S1_x_at	8/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.47372.1.S1_x_at	7/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	Os.47372.1.S1_at	7/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32260.1.S1_at	6/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein
LOC_Os06g39730	OsAffx.32200.1.S1_x_at	2/11	6	+	23581195..23587647	Ribulose bisphosphate carboxylase large chain, catalytic domain containing protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50203.1.S1_at--812--821	1	Chr06:23557627..23557651 (25 bp)	GGAATCATGGTGCTTCCGGAGACAT	LOC_Os06g39680
Os.50203.1.S1_at--934--425	1	Chr06:23557642..23557666 (25 bp)	CCGGAGACATGCATCGCGAAGCGAT	LOC_Os06g39680
Os.50203.1.S1_at--307--909	1	Chr06:23557726..23557750 (25 bp)	TGCTACATGGATTCTTCAACTTCAA	LOC_Os06g39680
Os.50203.1.S1_at--832--309	1	Chr06:23557833..23557857 (25 bp)	AATACTCCGCAAAGCCTTCATGGAA	LOC_Os06g39680
Os.50203.1.S1_at--567--553	1	Chr06:23557873..23557897 (25 bp)	GAAAAACTGACTGACGATGACCTGC	LOC_Os06g39680
Os.50203.1.S1_at--631--29	1	Chr06:23557914..23557938 (25 bp)	ATAGCAGTGGTTATCTTGTGAAGCA	LOC_Os06g39680
Os.50203.1.S1_at--70--465	1	Chr06:23557985..23558009 (25 bp)	GCGTAATTTTGCTGTGCCACCATGA	LOC_Os06g39680
Os.50203.1.S1_at--451--75	1	Chr06:23558065..23558089 (25 bp)	ATGTAATTTTGCTGTGCCACCATGG	LOC_Os06g39680
Os.50203.1.S1_at--961--265	1	Chr06:23558092..23558116 (25 bp)	AAGCCTACCCTGTACTGACAATGAC	LOC_Os06g39680
Os.50203.1.S1_at--246--977	1	Chr06:23558145..23558169 (25 bp)	TAATCCTGATGTATGCTGTTAGCCT	LOC_Os06g39680
Os.50203.1.S1_at--926--1013	1	Chr06:23558156..23558180 (25 bp)	TATGCTGTTAGCCTGTCTGTAGAAT	LOC_Os06g39680

Target Sequence

GGAATCATGGTGCTTCCGGAGACATGCATCGCGAAGCGATGGACAAAGAGGGCAAAGACTGGGCCAGAATTAATTGGGCA
TAATCTTGAGAATGGAAATTGCTACATGGATTCTTCAACTTCAAGGTATAATGATCTCATTCATGATGCTATCAAATGTG
CAGAGAAGGGAGCTGTATCAGCAGATAACTTCAGAGTTGCAAAGGAAATACTCCGCAAAGCCTTCATGGAAATCAAGTGT
CTTGGAGAAAAACTGACTGACGATGACCTGCAGCAGGTTGACAGTAGATAGCAGTGGTTATCTTGTGAAGCATTTGAGAG
ATTGTTCCAGATATCTTTTACTAAAGGATGGAAATGAGGCGTAATTTTGCTGTGCCACCATGAGTAAAAGCATTTGAGAG
ATTGTTCCAGGTATCTTTTATTAAAGGATGGAAATGAGATGTAATTTTGCTGTGCCACCATGGGCAAGCCTACCCTGTAC
TGACAATGACCAATTAACATATTTAACCACTGTAAATCTAATCCTGATGTATGCTGTTAGCCTGTCTGTAGAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis