Browse Element(s) Details

Os.50343.1.S1_at

Description

gb:AK120804.1
DB_XREF= gi:37990427
TID=Os.50343.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013C21, full insert sequence.
FL= gb:AK120804.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39660	11/11	FAD binding domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39624	NA	NA	6	+	23520939..23525639	transposon protein, putative, Pong sub-class, expressed
LOC_Os06g39640	Os.9351.1.S1_at	7/11	6	+	23539785..23545931	PINHEAD protein, putative, expressed
LOC_Os06g39650	NA	NA	6	+	23547032..23548624	pentatricopeptide, putative, expressed
LOC_Os06g39660	Os.50343.1.S1_at	11/11	6	+	23548716..23551685	FAD binding domain containing protein, expressed
LOC_Os06g39670	NA	NA	6	+	23553116..23553877	hypothetical protein
LOC_Os06g39680	Os.50203.1.S1_at	11/11	6	+	23555510..23558218	transposon protein, putative, unclassified, expressed
LOC_Os06g39690	Os.11654.1.S1_at	11/11	6	+	23558711..23562074	SOUL heme-binding protein, expressed
LOC_Os06g39700	Os.26455.2.S1_s_at	11/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32333.1.S1_x_at	11/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32331.1.S1_x_at	10/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32332.1.S1_x_at	7/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700	OsAffx.32334.1.S1_x_at	5/11	6	+	23565357..23567409	DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39710	Os.26592.1.S1_s_at	11/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710	Os.26592.3.S1_x_at	7/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710	Os.26592.2.A1_s_at	7/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39710	Os.26592.2.A1_x_at	3/11	6	+	23571438..23572856	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g39720	OsAffx.32314.1.S1_at	7/11	6	+	23573779..23574126	ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os06g39720	Os.48031.1.S1_x_at	6/11	6	+	23573779..23574126	ATP-dependent Clp protease proteolytic subunit, putative

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Gene Ontology Classification

GO id	Type	Name
GO:0016491	molecular_function	oxidoreductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50343.1.S1_at--311--889	1	Chr06:23551182..23551206 (25 bp)	TGAGGAGCACCAACATGTCCATCCT	LOC_Os06g39660
Os.50343.1.S1_at--210--183	1	Chr06:23551341..23551365 (25 bp)	ACGCGCGCAGGCTCGGACGGCTCAA	LOC_Os06g39660
Os.50343.1.S1_at--70--127	1	Chr06:23551434..23551458 (25 bp)	AGATTTCGCAGCTGCGGCAGAGCAG	LOC_Os06g39660
Os.50343.1.S1_at--1063--503	1	Chr06:23551450..23551474 (25 bp)	GCAGAGCAGCATGCCGTATTTCAGT	LOC_Os06g39660
Os.50343.1.S1_at--1093--59	1	Chr06:23551460..23551484 (25 bp)	ATGCCGTATTTCAGTGGCGCGCCAA	LOC_Os06g39660
Os.50343.1.S1_at--307--457	1	Chr06:23551476..23551500 (25 bp)	GCGCGCCAACCATTGAGTGATCTAA	LOC_Os06g39660
Os.50343.1.S1_at--994--557	1	Chr06:23551535..23551559 (25 bp)	GAAATGGCTATCTCTATCATAGGTT	LOC_Os06g39660
Os.50343.1.S1_at--182--1017	1	Chr06:23551549..23551573 (25 bp)	TATCATAGGTTTTCTTTACCGAAAT	LOC_Os06g39660
Os.50343.1.S1_at--343--1033	1	Chr06:23551573..23551597 (25 bp)	TTTCAAATTTTTAGCTCCTGCCCTG	LOC_Os06g39660
Os.50343.1.S1_at--1156--999	1	Chr06:23551584..23551608 (25 bp)	TAGCTCCTGCCCTGTTTGGAATAAA	LOC_Os06g39660
Os.50343.1.S1_at--1026--427	1	Chr06:23551589..23551613 (25 bp)	CCTGCCCTGTTTGGAATAAATGAAA	LOC_Os06g39660

Target Sequence

TGAGGAGCACCAACATGTCCATCCTCGACGCCCGCGTGCTCGGCTGCTGCCTCGCGAGGTGGGGCGGCGATGGCAACGCC
GAGCCGACGTCGACGCCGCGGCGGGCGCTGGCCGAGTACGAGGCAGCGCGGCGGCCGGTCGTGGCGGCGCAGGTGCTGCA
CGCGCGCAGGCTCGGACGGCTCAAGCAGGGCCTGGGCATGGGCAGCGCCGGGGACGGGGAGGGGTTCGACGCGAGGACGG
CGACGGAGGAGGAGATTTCGCAGCTGCGGCAGAGCAGCATGCCGTATTTCAGTGGCGCGCCAACCATTGAGTGATCTAAT
AAATGTATTTTTGTGAATTTTTATATAAAGAAAGAAATGGCTATCTCTATCATAGGTTTTCTTTACCGAAATTTCAAATT
TTTAGCTCCTGCCCTGTTTGGAATAAATGAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis