Browse Element(s) Details


Os.9351.1.S1_at

Description gb:AB081950.1
DB_XREF= gi:21280320
GEN=OsPNH1
TID=Os.9351.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9351 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPNH1 mRNA for ZLLPNH homologous protein, complete cds.
PROD=ZLLPNH homologous protein
FL= gb:AB081950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g396407/11PINHEAD protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39624NANA6+23520939..23525639transposon protein, putative, Pong sub-class, expressed
LOC_Os06g39640Os.9351.1.S1_at7/116+23539785..23545931PINHEAD protein, putative, expressed
LOC_Os06g39650NANA6+23547032..23548624pentatricopeptide, putative, expressed
LOC_Os06g39660Os.50343.1.S1_at11/116+23548716..23551685FAD binding domain containing protein, expressed
LOC_Os06g39670NANA6+23553116..23553877hypothetical protein
LOC_Os06g39680Os.50203.1.S1_at11/116+23555510..23558218transposon protein, putative, unclassified, expressed
LOC_Os06g39690Os.11654.1.S1_at11/116+23558711..23562074SOUL heme-binding protein, expressed
LOC_Os06g39700Os.26455.2.S1_s_at11/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700OsAffx.32333.1.S1_x_at11/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700OsAffx.32331.1.S1_x_at10/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700OsAffx.32332.1.S1_x_at7/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g39700OsAffx.32334.1.S1_x_at5/116+23565357..23567409DNA-directed RNA polymerase alpha chain, putative

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9351.1.S1_at--299--1071Chr06:23545417..23545441 (25 bp)
AGGGAACAAGTAGGCCAGCTCACTA
LOC_Os06g39640
Os.9351.1.S1_at--1161--3311Chr06:23545437..23545461 (25 bp)
CACTACCACGTCCTTTGGGATGAGA
LOC_Os06g39640
Os.9351.1.S1_at--1013--10711Chr06:23545505..23545621 (25 bp)
TTGCTACACTTATGCACGGTGCACA
LOC_Os06g39640
Os.9351.1.S1_at--941--8811Chr06:23545758..23545778 (21 bp)
TGTTGTTCCACCTGCATACTATGCG
LOC_Os06g39640
Os.9351.1.S1_at--99--5891Chr06:23545795..23545819 (25 bp)
GAGCGCGGTTCTACATGGAGCCAGA
LOC_Os06g39640
Os.9351.1.S1_at--71--5371Chr06:23545844..23545868 (25 bp)
GAAGAGCTCCACTGGGACGAACGGA
LOC_Os06g39640
Os.9351.1.S1_at--944--3971Chr06:23545873..23545897 (25 bp)
CGGTGAAGCCATTGCCTGCGGTGAA
LOC_Os06g39640
Os.9351.1.S1_at--445--5731Chr06:23545933..23545957 (25 bp)
GACTGGGAGACTACCTTTAACTACT
NONE
Os.9351.1.S1_at--441--2711Chr06:23546037..23546061 (25 bp)
AAGCATTTGGATCCTGAGCGACCTC
NONE
Os.9351.1.S1_at--52--5831Chr06:23546056..23546080 (25 bp)
GACCTCTTTTGACCACTCTGTAAAG
NONE
Os.9351.1.S1_at--143--1131Chr06:23546131..23546155 (25 bp)
AGTGCACTCAGTGCTTGTTTTTCCA
NONE
Target Sequence 
AGGGAACAAGTAGGCCAGCTCACTACCACGTCCTTTGGGATGAGAACAATTTCACTGCAGACGAAATGCAGACATTGACA
AACAACCTTTGCTACACTTATGCACGGTGCACACGCTCTGTTTCTGTTGTTCCACCTGCATACTATGCGCATCTGGCTGC
GTTTCGAGCGCGGTTCTACATGGAGCCAGAGATGTCGGAGAACCAGACGACGTCGAAGAGCTCCACTGGGACGAACGGAA
CCTCGGTGAAGCCATTGCCTGCGGTGAAGGAGAAGGTGAAGAGGGTGATGTTCTACTGTTGATGACTGGGAGACTACCTT
TAACTACTCACATATGATGTACCTAACATTGTAGAATTTTAGTGGTAGGGATTTAGAATTAGCTTCCTTCAGGAAAGGGA
GCAGAGCAAGCATTTGGATCCTGAGCGACCTCTTTTGACCACTCTGTAAAGTACTAAGTAACGCATGTATAATAGTTGTT
GTATCAGTCTGAAAAAAAGGAAGTGCACTCAGTGCTTGTTTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis