Browse Element(s) Details


OsAffx.30475.9.S1_s_at

Description tigr:9631.m04163
TID=OsAffx.30475.9
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP synthase F1, epsilon subunit, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5800011/11ATP synthase epsilon chain, putative, expressed
LOC_Os06g0298011/11ATP synthase F1, epsilon subunit family protein
LOC_Os03g5587411/11ATP synthase beta chain, putative
LOC_Os06g3974010/11ATP synthase beta chain, putative
LOC_Os12g194308/11ATP synthase epsilon chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57974OsAffx.32214.1.S1_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.26050.2.S2_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_x_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.23039.1.S1_x_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.2020.1.S1_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57990OsAffx.11641.1.S1_s_at11/111+33862980..33863697hypothetical protein
LOC_Os01g57990OsAffx.11641.1.S1_at9/111+33862980..33863697hypothetical protein
LOC_Os01g58000OsAffx.30475.9.S1_s_at11/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58000OsAffx.30475.1.S1_s_at5/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58010OsAffx.32284.1.S1_x_at11/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58010OsAffx.21694.3.S1_x_at6/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58020OsAffx.26050.37.S1_s_at11/111+33880750..33881636Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0005754cellular_componentproton-transporting ATP synthase, catalytic core (sensu Eukaryota)
GO:0009544cellular_componentchloroplast ATP synthase complex
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0015078molecular_functionhydrogen ion transporter activity
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30475.9.S1_s_at--629--94910Chr12:8527162..8527186 (25 bp)
TCTACTAATAGTGGCCAAATTGGCG
NONE
OsAffx.30475.9.S1_s_at--682--32710Chr12:8527177..8527201 (25 bp)
CAAATTGGCGTATTACCAAACCACG
NONE
OsAffx.30475.9.S1_s_at--628--21910Chr08:16395995..16396019 (25 bp)
ACACAGCTGTAGATATGGGTCCCTT
NONE
OsAffx.30475.9.S1_s_at--319--279Chr06:24553966..24553990 (25 bp)
ATATGGGTCCCTTGAGAATACGCCT
NONE
OsAffx.30475.9.S1_s_at--97--41510Chr12:8527243..8527267 (25 bp)
CGCCTCCTCAACGATCAATGGTTAA
NONE
OsAffx.30475.9.S1_s_at--98--6399Chr12:8527255..8527279 (25 bp)
GATCAATGGTTAACGGCGGTTCTGT
NONE
OsAffx.30475.9.S1_s_at--297--5898Chr12:8527281..8527305 (25 bp)
GAGCGGTTTTGCCAGAATAGTTAAT
NONE
OsAffx.30475.9.S1_s_at--520--2577Chr12:8527337..8527361 (25 bp)
AACTGGGTAGTGACATTGATCCGGA
NONE
OsAffx.30475.9.S1_s_at--592--81910Chr12:8527359..8527383 (25 bp)
GGAAGAAGCTCAACAGGCACTTGAA
NONE
OsAffx.30475.9.S1_s_at--231--34911Chr12:8527372..8527396 (25 bp)
CAGGCACTTGAAATAGCCGAAGCTA
NONE
OsAffx.30475.9.S1_s_at--837--299Chr12:8527384..8527408 (25 bp)
ATAGCCGAAGCTAACGTGAGTAGAG
NONE
Target Sequence 
TCTACTAATAGTGGCCAAATTGGCGTATTACCAAACCACGCCCCCATTAACACAGCTGTAGATATGGGTCCCTTGAGAAT
ACGCCTCCTCAACGATCAATGGTTAACGGCGGTTCTGTGGAGCGGTTTTGCCAGAATAGTTAATAATGAGATCATCATTT
TAGGAAATGATGCGGAACTGGGTAGTGACATTGATCCGGAAGAAGCTCAACAGGCACTTGAAATAGCCGAAGCTAACGTG
AGTAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30475.9.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis