Browse Element(s) Details


OsAffx.32284.1.S1_x_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=atp6
TID=OsAffx.32284.1
CNT=1
FEA=DNA_29
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP synthase F0 subunit 6 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=ATP synthase F0 subunit 6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5801011/11ATP synthase a chain, putative
LOC_Os12g236104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57974OsAffx.32214.1.S1_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.26050.2.S2_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_x_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.23039.1.S1_x_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.2020.1.S1_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57990OsAffx.11641.1.S1_s_at11/111+33862980..33863697hypothetical protein
LOC_Os01g57990OsAffx.11641.1.S1_at9/111+33862980..33863697hypothetical protein
LOC_Os01g58000OsAffx.30475.9.S1_s_at11/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58000OsAffx.30475.1.S1_s_at5/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58010OsAffx.32284.1.S1_x_at11/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58010OsAffx.21694.3.S1_x_at6/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58020OsAffx.26050.37.S1_s_at11/111+33880750..33881636Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed
LOC_Os01g58040OsAffx.30473.1.S1_x_at11/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58040OsAffx.30473.2.S1_x_at9/111+33894503..33896937Photosystem II D2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32284.1.S1_x_at--375--10112Chr01:33876730..33876754 (25 bp)
TATGATTTCGTGCTGAACCTGGTAA
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--49--4972Chr01:33876797..33876821 (25 bp)
GCATCTCGGTCACTTTTACTTTTTC
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--787--6791Chr01:33876822..33876846 (25 bp)
GTTATTTCGTAATCCCCAGGGTATG
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--736--6472Chr01:33876846..33876870 (25 bp)
GATACCCTTTAGCTTCACAGTGACA
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--844--7132Chr01:33876872..33876896 (25 bp)
GTCATTTTCTCATTACTTTGGCTCT
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--144--4711Chr01:33876997..33877021 (25 bp)
GCACCTTTTTTAGTACTCCTTGAGC
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--1029--4831Chr01:33877020..33877044 (25 bp)
GCTAATCTCTCATTGTTTTCGTGCA
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--684--2871Chr01:33877107..33877131 (25 bp)
AAGTGGGTTCGCTTGGACTATGCTA
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--71--8051Chr01:33877159..33877183 (25 bp)
GGAGATCTTGGTCCCTTATTTATAG
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--603--10051Chr01:33877181..33877205 (25 bp)
TAGTTCTAGCATTAACCGGTCTGGA
LOC_Os01g58010
OsAffx.32284.1.S1_x_at--879--1572Chr07:9784992..9785016 (25 bp)
AGCTCATGTTTCTACGATCTCAATT
NONE
Target Sequence 
TATGATTTCGTGCTGAACCTGGTAAACGAACAAATAGGTGGAAATGTTAAACAAAAGTTTTTCCCTCGCATCTCGGTCAC
TTTTACTTTTTCGTTATTTCGTAATCCCCAGGGTATGATACCCTTTAGCTTCACAGTGACAAGTCATTTTCTCATTACTT
TGGCTCTTTCATTTTCCATTTTTATAGGCATTACGATCGTTGGATTTCAAAGACATGGGCTTCATTTTTTTAGCTTCTTA
TTACCAGCGGGAGTCCCACTGCCATTAGCACCTTTTTTAGTACTCCTTGAGCTAATCTCTCATTGTTTTCGTGCATTAAG
CTCAGGAATACGTTTATTTGCTAATATGATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTTCGCTTGGACTATGC
TATTTCTGAATAATATTTTCTATTTCATAGGAGATCTTGGTCCCTTATTTATAGTTCTAGCATTAACCGGTCTGGAATTA
GGTGTAGCTATATTACAAGCTCATGTTTCTACGATCTCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32284.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis