Browse Element(s) Details


OsAffx.11641.1.S1_s_at

Description tigr:9629.m05686
TID=OsAffx.11641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5799011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57974OsAffx.32214.1.S1_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.26050.2.S2_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_x_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.23039.1.S1_x_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.2020.1.S1_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57990OsAffx.11641.1.S1_s_at11/111+33862980..33863697hypothetical protein
LOC_Os01g57990OsAffx.11641.1.S1_at9/111+33862980..33863697hypothetical protein
LOC_Os01g58000OsAffx.30475.9.S1_s_at11/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58000OsAffx.30475.1.S1_s_at5/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58010OsAffx.32284.1.S1_x_at11/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58010OsAffx.21694.3.S1_x_at6/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58020OsAffx.26050.37.S1_s_at11/111+33880750..33881636Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11641.1.S1_s_at--829--1252Chr03:13619720..13619744 (25 bp)
AGATATCTTTTGCAATCAGCCCCAA
NONE
OsAffx.11641.1.S1_s_at--246--2351Chr01:33863329..33863353 (25 bp)
AAAGCACTGCTTTGGGCCCAGGAAG
LOC_Os01g57990
OsAffx.11641.1.S1_s_at--140--2893Chr03:13619794..13619818 (25 bp)
AAGGGAATGAGCTCGGCTGCTTCTC
NONE
OsAffx.11641.1.S1_s_at--122--32Chr03:13619870..13619894 (25 bp)
ATTGGCGCTTTGCTCTCCTCTTATT
NONE
OsAffx.11641.1.S1_s_at--576--10192Chr03:13619891..13619915 (25 bp)
TATTTCTTCATTGGAGGGTTCGGAT
NONE
OsAffx.11641.1.S1_s_at--403--7672Chr03:13619906..13619930 (25 bp)
GGGTTCGGATGGACTTCGCCGTTCT
NONE
OsAffx.11641.1.S1_s_at--741--9312Chr03:13619921..13619945 (25 bp)
TCGCCGTTCTTTCCCAACGAAAATG
NONE
OsAffx.11641.1.S1_s_at--1041--2872Chr03:13619948..13619972 (25 bp)
AAGGGCTGTATCACATCGAGATGTC
NONE
OsAffx.11641.1.S1_s_at--861--9352Chr03:13619963..13619987 (25 bp)
TCGAGATGTCGATTCGTTTTCCGCC
NONE
OsAffx.11641.1.S1_s_at--69--4033Chr03:13619977..13620001 (25 bp)
CGTTTTCCGCCCCAAATGAGATGGG
NONE
OsAffx.11641.1.S1_s_at--509--7632Chr01:33863643..33863667 (25 bp)
GGGAGCACCTCAGTATACGATCGCG
LOC_Os01g57990
Target Sequence 
AGATATCTTTTGCAATCAGCCCCAAATCCTTGATTTGGCCAGGAAACAAAGCACTGCTTTGGGCCCAGGAAGCGAAGGGA
ATGAGCTCGGCTGCTTCTCCTCCACACTTCTTTATTTCTCCGTGCCCCTTCCGCATGCGCTTCGCGCGCCATTGGCGCTT
TGCTCTCCTCTTATTTCTTCATTGGAGGGTTCGGATGGACTTCGCCGTTCTTTCCCAACGAAAATGGAAAGGGCTGTATC
ACATCGAGATGTCGATTCGTTTTCCGCCCCAAATGAGATGGGGAATTAGTCACCTCTGTCCCTTCATCTTTATGAAAGGA
ATCAAGGCCCGGCCCGGCTCGCGTCGTTCCAACAACCGACGGGGAGCACCTCAGTATACGATCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11641.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis