Browse Element(s) Details


OsAffx.11641.1.S1_at

Description tigr:9629.m05686
TID=OsAffx.11641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g579909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57974OsAffx.32214.1.S1_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.26050.2.S2_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_x_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.23039.1.S1_x_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.2020.1.S1_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57990OsAffx.11641.1.S1_s_at11/111+33862980..33863697hypothetical protein
LOC_Os01g57990OsAffx.11641.1.S1_at9/111+33862980..33863697hypothetical protein
LOC_Os01g58000OsAffx.30475.9.S1_s_at11/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58000OsAffx.30475.1.S1_s_at5/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58010OsAffx.32284.1.S1_x_at11/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58010OsAffx.21694.3.S1_x_at6/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58020OsAffx.26050.37.S1_s_at11/111+33880750..33881636Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11641.1.S1_at--550--3251Chr01:33863011..33863035 (25 bp)
CAACGTTCTGCCAGACACTGGACAG
LOC_Os01g57990
OsAffx.11641.1.S1_at--412--2591Chr01:33863012..33863036 (25 bp)
AACGTTCTGCCAGACACTGGACAGG
LOC_Os01g57990
OsAffx.11641.1.S1_at--519--1891Chr01:33863013..33863037 (25 bp)
ACGTTCTGCCAGACACTGGACAGGG
LOC_Os01g57990
OsAffx.11641.1.S1_at--748--4031Chr01:33863014..33863037 (24 bp)
CGTTCTGCCAGACACTGGACAGGGA
LOC_Os01g57990
OsAffx.11641.1.S1_at--1030--6711NONE
GTTCTGCCAGACACTGGACAGGGAT
NONE
OsAffx.11641.1.S1_at--403--10591NONE
TTCTGCCAGACACTGGACAGGGATA
NONE
OsAffx.11641.1.S1_at--742--9491Chr01:33863017..33863037 (21 bp)
TCTGCCAGACACTGGACAGGGATAT
LOC_Os01g57990
OsAffx.11641.1.S1_at--737--9191Chr01:33863019..33863251 (25 bp)
TGCCAGACACTGGACAGGGATATCT
LOC_Os01g57990
OsAffx.11641.1.S1_at--1064--4411Chr01:33863020..33863252 (25 bp)
GCCAGACACTGGACAGGGATATCTG
LOC_Os01g57990
OsAffx.11641.1.S1_at--884--1411Chr01:33863023..33863255 (25 bp)
AGACACTGGACAGGGATATCTGGAT
LOC_Os01g57990
OsAffx.11641.1.S1_at--447--5631Chr01:33863024..33863256 (25 bp)
GACACTGGACAGGGATATCTGGATA
LOC_Os01g57990
Target Sequence 
CAACGTTCTGCCAGACACTGGACAGGGATATCTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis