Browse Element(s) Details


OsAffx.30239.2.S1_at

Description tigr:9638.m00132
TID=OsAffx.30239.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0228411/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02250OsAffx.30239.1.S1_at11/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250OsAffx.30223.1.S1_s_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250Os.22461.1.S1_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02260Os.21957.2.S1_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.2.S1_x_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_x_at10/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_at7/1110+789816..793898POT family protein, expressed
LOC_Os10g02270NANA10+797132..797852expressed protein
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein
LOC_Os10g02340OsAffx.20797.1.S1_at11/1110+820900..823141POT family protein, expressed
LOC_Os10g02340Os.4008.2.S1_x_at1/1110+820900..823141POT family protein, expressed
LOC_Os10g02350Os.46462.1.S1_at11/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02350Os.46462.2.S1_x_at9/1110+824277..827970Endomembrane protein 70 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30239.2.S1_at--378--1611Chr10:800838..800862 (25 bp)
AGCGGTGGCAAAGGCCTCTACCGCA
LOC_Os10g02284
OsAffx.30239.2.S1_at--513--1651Chr10:800895..800919 (25 bp)
AGCGACTCGCGGAGCGCCATGGACG
LOC_Os10g02284
OsAffx.30239.2.S1_at--674--7151Chr10:800982..801006 (25 bp)
GTCTACTTCGAGCAATGGCCGCGCG
LOC_Os10g02284
OsAffx.30239.2.S1_at--536--5611Chr10:801051..801075 (25 bp)
GACAAGGAGGAGTACCGATTCCGGA
LOC_Os10g02284
OsAffx.30239.2.S1_at--997--9951Chr10:801063..801087 (25 bp)
TACCGATTCCGGAGGTCGGATCTCA
LOC_Os10g02284
OsAffx.30239.2.S1_at--605--9271Chr10:801070..801094 (25 bp)
TCCGGAGGTCGGATCTCAAAATGGA
LOC_Os10g02284
OsAffx.30239.2.S1_at--520--7951Chr10:801080..801104 (25 bp)
GGATCTCAAAATGGAGTTGAACCGG
LOC_Os10g02284
OsAffx.30239.2.S1_at--1132--3971Chr10:801206..801230 (25 bp)
CGGGTATGCCTGTGTGAGCGCCAAC
LOC_Os10g02284
OsAffx.30239.2.S1_at--41--3191Chr10:801272..801296 (25 bp)
CAATTGCAGCAATGGTTACGAGGGT
LOC_Os10g02284
OsAffx.30239.2.S1_at--910--5171Chr10:801280..801304 (25 bp)
GCAATGGTTACGAGGGTAATCCCTA
LOC_Os10g02284
OsAffx.30239.2.S1_at--49--6151Chr10:801291..801315 (25 bp)
GAGGGTAATCCCTACGACAACGATG
LOC_Os10g02284
Target Sequence 
AGCGGTGGCAAAGGCCTCTACCGCAACCTCTACTACGCCGGCTGTGTCACCTACTGCAGCGACTCGCGGAGCGCCATGGA
CGGCAAGTGCGCCGGCGTCGGCTGCTGCCACGTCGACATCCCGCCGGAGCTCACCGACAACGTCGTCTACTTCGAGCAAT
GGCCGCGCGGCGAACAGGTGGACTTCAGCCCCTGCGACTATGCCTTCCTCGTCGACAAGGAGGAGTACCGATTCCGGAGG
TCGGATCTCAAAATGGAGTTGAACCGGAGGATGCCGGTGTGGCTAGACTGGGCCATCCGTGACCGCCGCGGCAACGACTC
CTCCGTGGCGTCCTGCCCGGCGCCGGAGGTGGAGAAGAAGAAGCCGGCCGGGTATGCCTGTGTGAGCGCCAACAGCGAGT
GCGTCAACTCCACCAATGGCCCGGGATACTACTGCAATTGCAGCAATGGTTACGAGGGTAATCCCTACGACAACGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30239.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis