Browse Element(s) Details


Os.21957.1.S1_at

Description gb:AK065457.1
DB_XREF= gi:32975475
TID=Os.21957.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative LeOPT1 - oligopeptide transporter (OSJNBb0012A20.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022B11, full insert sequence.
FL= gb:AK065457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g022607/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02230Os.4009.1.S1_at11/1110+766451..767947hypothetical protein
LOC_Os10g02240Os.46739.1.A1_x_at8/1110+772270..775156POT family protein, expressed
LOC_Os10g02240OsAffx.20798.1.S1_x_at1/1110+772270..775156POT family protein, expressed
LOC_Os10g02250OsAffx.30239.1.S1_at11/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250OsAffx.30223.1.S1_s_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250Os.22461.1.S1_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02260Os.21957.2.S1_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.2.S1_x_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_x_at10/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_at7/1110+789816..793898POT family protein, expressed
LOC_Os10g02270NANA10+797132..797852expressed protein
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21957.1.S1_at--1117--9051NONE
TGCATCGGTATGTCTCAGCTCGCAA
NONE
Os.21957.1.S1_at--901--491NONE
ATCGGTATGTCTCAGCTCGCAATCG
NONE
Os.21957.1.S1_at--795--3951NONE
CGGTATGTCTCAGCTCGCAATCGCT
NONE
Os.21957.1.S1_at--909--3511Chr10:790335..790359 (25 bp)
CATGTTTGTGTATTCTTCCACGAGG
LOC_Os10g02260
Os.21957.1.S1_at--484--6851Chr10:790332..790356 (25 bp)
GTTTGTGTATTCTTCCACGAGGCAC
LOC_Os10g02260
Os.21957.1.S1_at--1044--8911Chr10:790289..790313 (25 bp)
TGACCAGATTTATACATAAGACATG
LOC_Os10g02260
Os.21957.1.S1_at--327--9791Chr10:790273..790297 (25 bp)
TAAGACATGAAGCACCAACGAAATC
LOC_Os10g02260
Os.21957.1.S1_at--613--5591Chr10:790254..790278 (25 bp)
GAAATCTAGAGGGTTATCATAACAT
LOC_Os10g02260
Os.21957.1.S1_at--1100--7671Chr10:790244..790268 (25 bp)
GGGTTATCATAACATCAACGAGTTA
LOC_Os10g02260
Os.21957.1.S1_at--220--9711Chr10:790230..790254 (25 bp)
TCAACGAGTTATACAAGAGAGATAC
LOC_Os10g02260
Os.21957.1.S1_at--708--6011NONE
GAGAGATACAATTATCATTTTAACG
NONE
Target Sequence 
TGCATCGGTATGTCTCAGCTCGCAATCGCTTCAGGAGCTTACTTCAACACGTTCGTGCTTGGCGCTGTCGCAGTGATCAC
GACGAGCAGTGGAGCACCTGGGTGGATTCCGGATAATCTGAATGAGGGCCATCTGGACTATTTCTTCTGGATGATGGCCA
CCCTTAGCTTACTTAATCTTGCCATGTTTGTGTATTCTTCCACGAGGCACAGAGAGAACACAGCTTCATGACCAGATTTA
TACATAAGACATGAAGCACCAACGAAATCTAGAGGGTTATCATAACATCAACGAGTTATACAAGAGAGATACAATTATCA
TTTTAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis