Browse Element(s) Details


Os.4009.1.S1_at

Description gb:NM_194570.1
DB_XREF= gi:37530499
TID=Os.4009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4009 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative peptideamino acid transporter (OSJNBb0012A20.7), mRNA.
PROD=putative peptideamino acid transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0223011/11hypothetical protein
LOC_Os05g430501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02210OsAffx.20798.1.S1_x_at9/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.20798.1.S1_at5/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.30217.1.S1_x_at2/1110+745328..749864POT family protein
LOC_Os10g02210Os.46546.2.S1_x_at1/1110+745328..749864POT family protein
LOC_Os10g02220Os.4008.1.S1_a_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02220Os.4008.2.S1_x_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02230Os.4009.1.S1_at11/1110+766451..767947hypothetical protein
LOC_Os10g02240Os.46739.1.A1_x_at8/1110+772270..775156POT family protein, expressed
LOC_Os10g02240OsAffx.20798.1.S1_x_at1/1110+772270..775156POT family protein, expressed
LOC_Os10g02250OsAffx.30239.1.S1_at11/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250OsAffx.30223.1.S1_s_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250Os.22461.1.S1_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02260Os.21957.2.S1_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.2.S1_x_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_x_at10/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_at7/1110+789816..793898POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4009.1.S1_at--412--9091Chr10:767719..767743 (25 bp)
TGCTCTCGAGCGCAACACAGCGAAT
LOC_Os10g02230
Os.4009.1.S1_at--14--4131Chr10:767709..767733 (25 bp)
CGCAACACAGCGAATTGGAGAGCAT
LOC_Os10g02230
Os.4009.1.S1_at--247--9631Chr10:767586..767705 (25 bp)
TCATGATCCTAGGTGATGTGCTCAG
LOC_Os10g02230
Os.4009.1.S1_at--224--571Chr10:767581..767601 (21 bp)
ATCCTAGGTGATGTGCTCAGTGAGT
LOC_Os10g02230
Os.4009.1.S1_at--713--9091Chr10:767568..767592 (25 bp)
TGCTCAGTGAGTGCTTGGCTTTCTA
LOC_Os10g02230
Os.4009.1.S1_at--392--1132Chr10:767559..767583 (25 bp)
AGTGCTTGGCTTTCTATGGGATCTC
LOC_Os10g02230
Os.4009.1.S1_at--1090--4931Chr10:767556..767580 (25 bp)
GCTTGGCTTTCTATGGGATCTCCAA
LOC_Os10g02230
Os.4009.1.S1_at--311--7971Chr10:767541..767565 (25 bp)
GGATCTCCAAGAATCTAGTGACCTG
LOC_Os10g02230
Os.4009.1.S1_at--308--2731Chr10:767533..767557 (25 bp)
AAGAATCTAGTGACCTGCTACCTGG
LOC_Os10g02230
Os.4009.1.S1_at--326--3711Chr10:767103..767551 (25 bp)
CTAGTGACCTGCTACCTGGCGGCGG
LOC_Os10g02230
Os.4009.1.S1_at--841--1831Chr10:766646..766670 (25 bp)
ACGCGGCGACCAGGGCAGAGGCGGC
LOC_Os10g02230
Target Sequence 
TGCTCTCGAGCGCAACACAGCGAATTGGAGAGCATGCTTCATGATCCTAGGTGATGTGCTCAGTGAGTGCTTGGCTTTCT
ATGGGATCTCCAAGAATCTAGTGACCTGCTACCTGGCGGCGGGCGGGCGAGGAGCCAACGCCGACGGGCTGCCAGCGGCG
GGGATGGCTGCGGGCGGCAGGCGAGGAGCCGAGGCTGGAGCTATAAGCTCACCATTAACGGATTACTTGAAAAAGGGTGA
CGTCGAGTATGAAGTGAACAAGATGGTGCTGAGGTTCATCTCACCGTCGTGCAAGACGCCACCGGCGAAGGAACACCGGG
CGCTCCACCCGCTCGACTTGTTCCGCAAGAGCTTGCTTAGCGGCCAGCACCATAGACCACGCGGCGACCAGGGCAGAGGC
GGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis