Browse Element(s) Details


OsAffx.30223.1.S1_s_at

Description tigr:9638.m00042
TID=OsAffx.30223.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0139011/11Protein kinase domain containing protein
LOC_Os07g1449011/11Protein kinase domain containing protein
LOC_Os10g022501/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01350NANA10+195468..198369retrotransposon protein, putative, unclassified, expressed
LOC_Os10g01360NANA10+199481..204775retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01370OsAffx.18069.1.S1_at11/1110+207704..208150expressed protein
LOC_Os10g01370OsAffx.7657.1.S1_x_at1/1110+207704..208150expressed protein
LOC_Os10g01380Os.27723.1.S1_a_at11/1110+212904..218022hypothetical protein
LOC_Os10g01380Os.38157.1.S1_s_at1/1110+212904..218022hypothetical protein
LOC_Os10g01390OsAffx.30223.1.S1_s_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.1.S1_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.2.S1_at9/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein
LOC_Os10g01410OsAffx.20818.1.S1_at10/1110+233481..235579Calcium binding EGF domain containing protein
LOC_Os10g01420OsAffx.28442.1.S1_at11/1110+236922..237188hypothetical protein
LOC_Os10g01430OsAffx.30225.1.S1_at11/1110+244165..244653hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_x_at10/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.1.S1_at9/1110+249251..251270hypothetical protein
LOC_Os10g01440OsAffx.30226.4.S1_x_at1/1110+249251..251270hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30223.1.S1_s_at--396--2052Chr07:8255989..8256013 (25 bp)
ACTTCTAACGGATAAGTTCATCCCT
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--795--9772Chr07:8256001..8256025 (25 bp)
TAAGTTCATCCCTAAGATATCAGAC
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--721--2752Chr07:8256057..8256081 (25 bp)
AAGACTTTACCATGTTTGTGGTAGG
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--125--3472Chr07:8256102..8256126 (25 bp)
CAGTGTTCCATAAGACTGGTCATTT
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--838--5733Chr07:8256115..8256139 (25 bp)
GACTGGTCATTTAACACAGAAGAGT
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--650--6872Chr07:8256145..8256169 (25 bp)
GTATAGCTTTGGAGTTGTACTACTT
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--616--8972Chr07:8256169..8256193 (25 bp)
TGAACTCATAAGTAGAAAGCCAACA
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--740--3172Chr07:8256206..8256230 (25 bp)
AATTGTAGCCTGATCATTGAGTTCC
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--339--7632Chr07:8256257..8256281 (25 bp)
GGGAGAATGATGTTCGACAAGGATA
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--938--3152Chr07:8256286..8256310 (25 bp)
AATTGAAGAAGACATCCTCATCCTT
LOC_Os07g14490
OsAffx.30223.1.S1_s_at--452--3532Chr07:8256298..8256322 (25 bp)
CATCCTCATCCTTGAAGAAATTGGC
LOC_Os07g14490
Target Sequence 
ACTTCTAACGGATAAGTTCATCCCTAAGATATCAGACTTTGGAACTTCCAAGCTTCTTACTGTAGACAAAGACTTTACCA
TGTTTGTGGTAGGAAGCATGGGCTACATAGACCCAGTGTTCCATAAGACTGGTCATTTAACACAGAAGAGTGATGTGTAT
AGCTTTGGAGTTGTACTACTTGAACTCATAAGTAGAAAGCCAACAATATATGGTGAAAATTGTAGCCTGATCATTGAGTT
CCAGAAGTCCTACGATAAAGAGAATAGTGGGAGAATGATGTTCGACAAGGATATTGAAATTGAAGAAGACATCCTCATCC
TTGAAGAAATTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30223.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis