Browse Element(s) Details


Os.27723.1.S1_a_at

Description gb:NM_186838.1
DB_XREF= gi:34900761
GEN=P0021G06.2
TID=Os.27723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 10, OSJNBa0096E22.9 (P0021G06.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 10, OSJNBa0096E22.9 (P0021G06.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0138011/11hypothetical protein
LOC_Os07g1451411/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01340OsAffx.30222.1.S1_at11/1110+193044..193571hypothetical protein
LOC_Os10g01350NANA10+195468..198369retrotransposon protein, putative, unclassified, expressed
LOC_Os10g01360NANA10+199481..204775retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01370OsAffx.18069.1.S1_at11/1110+207704..208150expressed protein
LOC_Os10g01370OsAffx.7657.1.S1_x_at1/1110+207704..208150expressed protein
LOC_Os10g01380Os.27723.1.S1_a_at11/1110+212904..218022hypothetical protein
LOC_Os10g01380Os.38157.1.S1_s_at1/1110+212904..218022hypothetical protein
LOC_Os10g01390OsAffx.30223.1.S1_s_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.1.S1_at11/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01390OsAffx.30223.2.S1_at9/1110+223327..226472Protein kinase domain containing protein
LOC_Os10g01400OsAffx.30224.1.S1_at11/1110+227709..228730hypothetical protein
LOC_Os10g01410OsAffx.20818.1.S1_at10/1110+233481..235579Calcium binding EGF domain containing protein
LOC_Os10g01420OsAffx.28442.1.S1_at11/1110+236922..237188hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27723.1.S1_a_at--71--7112Chr10:215648..215672 (25 bp)
GTCAGACCCCGAACATTGCTATTGT
LOC_Os10g01380
Os.27723.1.S1_a_at--280--5372Chr10:215723..215747 (25 bp)
GAAGAATGCCAGCTCAAATCTACTA
LOC_Os10g01380
Os.27723.1.S1_a_at--195--9712Chr10:215736..215760 (25 bp)
TCAAATCTACTAAACACTGGGAGCA
LOC_Os10g01380
Os.27723.1.S1_a_at--585--1432Chr10:216905..216929 (25 bp)
AGAACACTCTTCTCAGGCTACGTTA
LOC_Os10g01380
Os.27723.1.S1_a_at--100--3752Chr10:216916..216940 (25 bp)
CTCAGGCTACGTTAGCTACCAAAAT
LOC_Os10g01380
Os.27723.1.S1_a_at--706--6712Chr10:216941..217278 (25 bp)
GTTCGAGAAGCCTACAATGCTGGCA
LOC_Os10g01380
Os.27723.1.S1_a_at--127--3032Chr10:217272..217293 (22 bp)
AATGCTGGCAGATCACAATTTGGGA
LOC_Os10g01380
Os.27723.1.S1_a_at--74--3192Chr10:217284..217308 (25 bp)
CAATTTGGGAGCTTACTCTCACTCG
LOC_Os10g01380
Os.27723.1.S1_a_at--662--6492Chr10:217819..217843 (25 bp)
GATAGCTTTCGAGTCTTTGTTCATA
LOC_Os10g01380
Os.27723.1.S1_a_at--522--9552Chr10:217832..217856 (25 bp)
TCTTTGTTCATAGGGCAGCTTCTGC
LOC_Os10g01380
Os.27723.1.S1_a_at--563--4912Chr10:217849..217873 (25 bp)
GCTTCTGCTGCATCAAAGCTGGCAA
LOC_Os10g01380
Target Sequence 
GTCAGACCCCGAACATTGCTATTGTGTGATTCTCAATGCACATGATGGGGCAGCTTTTCCTGAAGACACTGAATCGAAGA
ATGCCAGCTCAAATCTACTAAACACTGGGAGCAACCAAGAAAAACCACCAAAGAGAACACTCTTCTCAGGCTACGTTAGC
TACCAAAATGTTCGAGAAGCCTACAATGCTGGCAGATCACAATTTGGGAGCTTACTCTCACTCGGGCATGACCAAACTAA
ACTTGATAAACTTTATATGAGGGGCCCTGAAGGACGTGGGGAAGTTGAAGTAGCTGTTTCTGGAATTGCAGATCAGAGCC
ATGAGAGATCAAAGAAAGATCCAGGAGATAGCTTTCGAGTCTTTGTTCATAGGGCAGCTTCTGCTGCATCAAAGCTGGCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27723.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis