Browse Element(s) Details


OsAffx.30223.1.S1_at

Description tigr:9638.m00042
TID=OsAffx.30223.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1450011/11hypothetical protein
LOC_Os10g0139011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14430NANA7+8234912..8237094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g14440OsAffx.16261.1.S1_at10/117+8237465..8238290hypothetical protein
LOC_Os07g14450OsAffx.28441.1.S1_at11/117+8239687..8240493hypothetical protein
LOC_Os07g14460OsAffx.28442.1.S1_at11/117+8245083..8245349hypothetical protein
LOC_Os07g14470OsAffx.20818.1.S1_at11/117+8246699..8248756hypothetical protein
LOC_Os07g14480NANA7+8249928..8250332hypothetical protein
LOC_Os07g14490OsAffx.30223.2.S1_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14490OsAffx.30223.1.S1_s_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14500OsAffx.30223.1.S1_at11/117+8257378..8258557hypothetical protein
LOC_Os07g14514Os.38884.2.S1_x_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.27723.1.S1_a_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38884.1.S1_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38157.1.S1_s_at1/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14530Os.35590.2.S1_at11/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.3.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.1.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30223.1.S1_at--16--1432Chr07:8257438..8257462 (25 bp)
AGAAAGGAAGATGGGCGCCGATTCT
LOC_Os07g14500
OsAffx.30223.1.S1_at--696--2792Chr07:8257445..8257469 (25 bp)
AAGATGGGCGCCGATTCTCTGGTGA
LOC_Os07g14500
OsAffx.30223.1.S1_at--771--1312Chr07:8257446..8257470 (25 bp)
AGATGGGCGCCGATTCTCTGGTGAC
LOC_Os07g14500
OsAffx.30223.1.S1_at--656--6252Chr07:8257447..8257471 (25 bp)
GATGGGCGCCGATTCTCTGGTGACC
LOC_Os07g14500
OsAffx.30223.1.S1_at--962--792Chr07:8257448..8257472 (25 bp)
ATGGGCGCCGATTCTCTGGTGACCA
LOC_Os07g14500
OsAffx.30223.1.S1_at--474--8652Chr07:8257449..8257473 (25 bp)
TGGGCGCCGATTCTCTGGTGACCAA
LOC_Os07g14500
OsAffx.30223.1.S1_at--628--6952Chr07:8257450..8257474 (25 bp)
GGGCGCCGATTCTCTGGTGACCAAA
LOC_Os07g14500
OsAffx.30223.1.S1_at--700--8392Chr07:8257451..8257475 (25 bp)
GGCGCCGATTCTCTGGTGACCAAAC
LOC_Os07g14500
OsAffx.30223.1.S1_at--940--4552Chr07:8257452..8257476 (25 bp)
GCGCCGATTCTCTGGTGACCAAACA
LOC_Os07g14500
OsAffx.30223.1.S1_at--774--4492Chr07:8257454..8257478 (25 bp)
GCCGATTCTCTGGTGACCAAACAGC
LOC_Os07g14500
OsAffx.30223.1.S1_at--474--6572Chr07:8257457..8257481 (25 bp)
GATTCTCTGGTGACCAAACAGCGGC
LOC_Os07g14500
Target Sequence 
AGAAAGGAAGATGGGCGCCGATTCTCTGGTGACCAAACAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis